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Plant biology through quantitative proteomics

Bygdell, Joakim (2013). Plant biology through quantitative proteomics. Diss. (sammanfattning/summary) Umeå : Sveriges lantbruksuniv., Acta Universitatis agriculturae Sueciae, 1652-6880 ; 2013:60
ISBN 978-91-576-7858-4
eISBN 978-91-576-7859-1
[Doctoral thesis]

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Abstract

Over the last decade the field of mass spectrometry based proteomics has advanced from qualitative, analyses leading to publications revolving around lists of identified proteins and peptides, to addressing more biologically relevant issues requiring measurement of the abundance of identified proteins and hence quantitive mass spectrometry.

The work described in this thesis addresses problems with quantitive proteomics in plant sciences, particularly complications caused by the complexity of plant proteomes (generated by genomic duplications), which makes mass spectrometry-based based proteomic analyses more difficult than in mammalian species. In order to understand complex biological processes it is vital to analyse the participating molecules with as little bias as possible. Strategies for minimizing and maximizing the acquired information in proteomic investigations of plants are presented in the appended papers and discussed in the thesis.

Authors/Creators:Bygdell, Joakim
Title:Plant biology through quantitative proteomics
Series/Journal:Acta Universitatis agriculturae Sueciae (1652-6880)
Year of publishing :October 2013
Volume:2013:60
Number of Pages:35
Papers/manuscripts:
NumberReferences
I.Nilsson, R., Bernfur, K., Gustavsson, N., Bygdell, J., Wingsle, G., & Larsson, C. (2010). Proteomics of plasma membranes from poplar trees reveals tissue distribution of transporters, receptors, and proteins in cell wall formation. Molecular & cellular proteomics : MCP, 9(2), 368–87.
II.Bygdell, J., Nilsson, R., Srivastava M. K., Srivastava, V., Quarnström, J., Sundberg, B. & Winglse, G. Protein isoforms involved in tension wood formation monitored at high tissue resolution. (Manuscript).
III.Srivastava, V., Obudulu, O., Bygdell, J., Löfstedt, T., Rydén, P., Nilsson, R., Ahnlund, M, Johansson, A., Jonsson, P., Freyhult, E., Qvarnström, J., Karlsson, J., Melzer, M., Moritz, T., Trygg, J., Hvidsten, T. & Wingsle, G. OnPLS integration of transcriptomic, proteomic and metabolomic data reveals multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. (Manuscript submitted to Biomedcentral).
IV.Businge, E., Bygdell, J., Wingsle, G., Moritz, T., & Egertsdotter, U. (2013). The effect of carbohydrates and osmoticum on storage reserve accumulation and germination of Norway spruce somatic embryos. Physiologia plantarum. doi:10.1111/ppl.12039
Place of Publication:Umeå
Publisher:Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences
ISBN for printed version:978-91-576-7858-4
ISBN for electronic version:978-91-576-7859-1
ISSN:1652-6880
Language:English
Publication Type:Doctoral thesis
Full Text Status:Public
Agris subject categories.:F Plant production > F60 Plant physiology and biochemistry
Subjects:(A) Swedish standard research categories 2011 > 1 Natural sciences > 106 Biological Sciences (Medical to be 3 and Agricultural to be 4) > Biochemistry and Molecular Biology
(A) Swedish standard research categories 2011 > 1 Natural sciences > 106 Biological Sciences (Medical to be 3 and Agricultural to be 4) > Bioinformatics and Systems Biology (methods development to be 10203)
Agrovoc terms:proteins, peptides, mass spectrometry, botany, populus, molecular biology
Keywords:quantitative proteomics, mass spectrometry, peptide identification
URN:NBN:urn:nbn:se:slu:epsilon-e-1648
Permanent URL:
http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-e-1648
ID Code:10817
Department:(S) > Dept. of Forest Genetics and Plant Physiology
Deposited By: Joakim Bygdell
Deposited On:01 Oct 2013 09:08
Metadata Last Modified:13 Dec 2014 13:11

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