Odilbekov, Firuz and Armoniené, Rita and Koc, Alexander and Svensson, Jan and Chawade, Aakash
(2019).
GWAS-Assisted Genomic Prediction to Predict Resistance to Septoria Tritici Blotch in Nordic Winter Wheat at Seedling Stage.
Frontiers in Genetics. 10
, 1224
, 1-10
[Journal article]
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Abstract
Septoria tritici blotch (STB) disease caused by Zymoseptoria tritici is one of the most damaging diseases of wheat causing significant yield losses worldwide. Identification and employment of resistant germplasm is the most cost-effective method to control STB. In this study, we characterized seedling stage resistance to STB in 175 winter wheat landraces and old cultivars of Nordic origin. The study revealed significant (p < 0.05) phenotypic differences in STB severity in the germplasm. Genome-wide association analysis (GWAS) using five different algorithms identified ten significant markers on five chromosomes. Six markers were localized within a region of 2 cM that contained seven candidate genes on chromosome 1B. Genomic prediction (GP) analysis resulted in a model with an accuracy of 0.47. To further improve the prediction efficiency, significant markers identified by GWAS were included as fixed effects in the GP model. Depending on the number of fixed effect markers, the prediction accuracy improved from 0.47 (without fixed effects) to 0.62 (all non-redundant GWAS markers as fixed effects), respectively. The resistant genotypes and single-nucleotide polymorphism (SNP) markers identified in the present study will serve as a valuable resource for future breeding for STB resistance in wheat. The results also highlight the benefits of integrating GWAS with GP to further improve the accuracy of GP.
Authors/Creators: | Odilbekov, Firuz and Armoniené, Rita and Koc, Alexander and Svensson, Jan and Chawade, Aakash | ||||
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Title: | GWAS-Assisted Genomic Prediction to Predict Resistance to Septoria Tritici Blotch in Nordic Winter Wheat at Seedling Stage | ||||
Year of publishing : | 2019 | ||||
Volume: | 10 | ||||
Article number: | 1224 | ||||
Number of Pages: | 10 | ||||
Publisher: | Frontiers | ||||
ISSN: | 1664-8021 | ||||
Language: | English | ||||
Publication Type: | Journal article | ||||
Article category: | Scientific peer reviewed | ||||
Version: | Published version | ||||
Copyright: | Creative Commons: Attribution 4.0 | ||||
Full Text Status: | Public | ||||
Subjects: | (A) Swedish standard research categories 2011 > 4 Agricultural Sciences > 401 Agricultural, Forestry and Fisheries > Agricultural Science | ||||
Keywords: | GWAS - genome-wide association study, genomic prediction (GP), genomic selection (GS), wheat, Septoria tritici blotch (STB), Quantitative trait loci (QTL) | ||||
URN:NBN: | urn:nbn:se:slu:epsilon-p-106675 | ||||
Permanent URL: | http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-p-106675 | ||||
Additional ID: |
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ID Code: | 17243 | ||||
Faculty: | LTV - Fakulteten för landskapsarkitektur, trädgårds- och växtproduktionsvetenskap | ||||
Department: | (LTJ, LTV) > Department of Plant Breeding (from 130101) | ||||
Deposited By: | SLUpub Connector | ||||
Deposited On: | 10 Jul 2020 10:39 | ||||
Metadata Last Modified: | 08 Aug 2020 10:25 |
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