Baison, John and Zhou, Linghua and Forsberg, Nils and Mörling, Tommy and Grahn, Thomas and Olsson, Lars and Karlsson, Bo and Wu, Harry and Mellerowicz, Ewa and Lundqvist, Sven-Olof and Garcia Gil, Rosario
(2020).
Genetic control of tracheid properties in Norway spruce wood.
Scientific Reports. 10
, 18089
[Journal article]
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Abstract
Through the use of genome-wide association studies (GWAS) mapping it is possible to establish the genetic basis of phenotypic trait variation. Our GWAS study presents the first such effort in Norway spruce (Picea abies (L). Karst.) for the traits related to wood tracheid characteristics. The study employed an exome capture genotyping approach that generated 178 101 Single Nucleotide Polymorphisms (SNPs) from 40 018 probes within a population of 517 Norway spruce mother trees. We applied a least absolute shrinkage and selection operator (LASSO) based association mapping method using a functional multi-locus mapping approach, with a stability selection probability method as the hypothesis testing approach to determine significant Quantitative Trait Loci (QTLs). The analysis has provided 30 significant associations, the majority of which show specific expression in wood-forming tissues or high ubiquitous expression, potentially controlling tracheids dimensions, their cell wall thickness and microfibril angle. Among the most promising candidates based on our results and prior information for other species are: Picea abies BIG GRAIN 2 (PabBG2) with a predicted function in auxin transport and sensitivity, and MA_373300g0010 encoding a protein similar to wall-associated receptor kinases, which were both associated with cell wall thickness. The results demonstrate feasibility of GWAS to identify novel candidate genes controlling industrially-relevant tracheid traits in Norway spruce.
Authors/Creators: | Baison, John and Zhou, Linghua and Forsberg, Nils and Mörling, Tommy and Grahn, Thomas and Olsson, Lars and Karlsson, Bo and Wu, Harry and Mellerowicz, Ewa and Lundqvist, Sven-Olof and Garcia Gil, Rosario | ||||
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Title: | Genetic control of tracheid properties in Norway spruce wood | ||||
Year of publishing : | 2020 | ||||
Volume: | 10 | ||||
Article number: | 18089 | ||||
Number of Pages: | 13 | ||||
ISSN: | 2045-2322 | ||||
Language: | English | ||||
Publication Type: | Journal article | ||||
Article category: | Scientific peer reviewed | ||||
Version: | Published version | ||||
Copyright: | Creative Commons: Attribution 4.0 | ||||
Full Text Status: | Public | ||||
Subjects: | (A) Swedish standard research categories 2011 > 4 Agricultural Sciences > 401 Agricultural, Forestry and Fisheries > Forest Science | ||||
URN:NBN: | urn:nbn:se:slu:epsilon-p-109055 | ||||
Permanent URL: | http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-p-109055 | ||||
Additional ID: |
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ID Code: | 19456 | ||||
Faculty: | S - Faculty of Forest Sciences | ||||
Department: | (S) > Dept. of Forest Genetics and Plant Physiology (S) > Dept. of Forest Ecology and Management | ||||
Deposited By: | SLUpub Connector | ||||
Deposited On: | 14 Dec 2020 15:43 | ||||
Metadata Last Modified: | 15 Jan 2021 19:17 |
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