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ECPGR recommended simple sequence repeat loci for analyses of European plum (Prunus domestica) collections

Nybom, Hilde and Giovannini, Daniela and Ordidge, Matthew and Hjeltnes, Stein Harald and Grahić, Jasmin and Gasi, Fuad (2020). ECPGR recommended simple sequence repeat loci for analyses of European plum (Prunus domestica) collections. Genetic resources. 1
[Research article]

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Abstract

A set of nine Simple Sequence Repeat (SSR) loci, approved by the ECPGR Prunus working group, are proposed as a standard set for genotyping European plum accessions. These loci show sufficient reliability in spite of problems caused by hexaploidy. Polymorphism in the loci is high and enables differentiation between unique plum accessions as well as analyses of genetic grouping and overall genetic structure. A set of seven reference accessions are described. A compiled dataset with allelic information for 165 accessions is presented. Genetic structure reveals three different K-values (2, 4 and 9) demonstrating a major dichotomy between Prunus insititia-related accessions and cultivars belonging to Prunus domestica sensu stricto, as well as differentiation among minor subgroups defined by pomological traits and geographical origin.

Authors/Creators:Nybom, Hilde and Giovannini, Daniela and Ordidge, Matthew and Hjeltnes, Stein Harald and Grahić, Jasmin and Gasi, Fuad
Title:ECPGR recommended simple sequence repeat loci for analyses of European plum (Prunus domestica) collections
Series Name/Journal:Genetic resources
Year of publishing :2020
Volume:1
Number of Pages:9
Associated Programs and Other Stakeholders:Z - SLU - Library > Odla mera
ISSN:2708-3764
Language:English
Publication Type:Research article
Article category:Scientific peer reviewed
Version:Accepted version
Copyright:Creative Commons: Attribution 4.0
Full Text Status:Public
Subjects:(A) Swedish standard research categories 2011 > 4 Agricultural Sciences > 401 Agricultural, Forestry and Fisheries > Horticulture
Keywords:DNA fingerprint, genetic resources, molecular markers
URN:NBN:urn:nbn:se:slu:epsilon-p-112647
Permanent URL:
http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-p-112647
Additional ID:
Type of IDID
DOI10.46265/genresj.2020.1.40-48
ID Code:24797
Faculty:LTV - Fakulteten för landskapsarkitektur, trädgårds- och växtproduktionsvetenskap
Department:(LTJ, LTV) > Department of Plant Breeding (from 130101)
Deposited By: SLUpub Connector
Deposited On:05 Jul 2021 08:25
Metadata Last Modified:06 Jul 2021 04:03

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