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Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae

Thorpe, Peter and Vetukuri, Ramesh and Hedley, Pete and Morris, Jenny and Whisson, Maximilian A and Welsh, Lydia R. J. and Whisson, Stephen (2021). Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae. G3. 11 , jkab282
[Research article]

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Abstract

Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis.

Authors/Creators:Thorpe, Peter and Vetukuri, Ramesh and Hedley, Pete and Morris, Jenny and Whisson, Maximilian A and Welsh, Lydia R. J. and Whisson, Stephen
Title:Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
Series Name/Journal:G3
Year of publishing :2021
Volume:11
Article number:jkab282
ISSN:2160-1836
Language:English
Publication Type:Research article
Article category:Scientific peer reviewed
Version:Published version
Copyright:Creative Commons: Attribution 4.0
Full Text Status:Public
Subjects:(A) Swedish standard research categories 2011 > 4 Agricultural Sciences > 401 Agricultural, Forestry and Fisheries > Agricultural Science
Keywords:tree pathogen, Phytophthora, oomycete, effector, RXLR
URN:NBN:urn:nbn:se:slu:epsilon-p-113607
Permanent URL:
http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-p-113607
Additional ID:
Type of IDID
DOI10.1093/g3journal/jkab282
ID Code:26012
Faculty:LTV - Fakulteten för landskapsarkitektur, trädgårds- och växtproduktionsvetenskap
Department:(LTJ, LTV) > Department of Plant Protection Biology
Deposited By: SLUpub Connector
Deposited On:02 Nov 2021 11:58
Metadata Last Modified:02 Nov 2021 12:01

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