Thorpe, Peter and Vetukuri, Ramesh and Hedley, Pete and Morris, Jenny and Whisson, Maximilian A and Welsh, Lydia R. J. and Whisson, Stephen
(2021).
Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae.
G3. 11
, jkab282
[Research article]
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Abstract
Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis.
| Authors/Creators: | Thorpe, Peter and Vetukuri, Ramesh and Hedley, Pete and Morris, Jenny and Whisson, Maximilian A and Welsh, Lydia R. J. and Whisson, Stephen | ||||
|---|---|---|---|---|---|
| Title: | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae | ||||
| Series Name/Journal: | G3 | ||||
| Year of publishing : | 2021 | ||||
| Volume: | 11 | ||||
| Article number: | jkab282 | ||||
| ISSN: | 2160-1836 | ||||
| Language: | English | ||||
| Publication Type: | Research article | ||||
| Article category: | Scientific peer reviewed | ||||
| Version: | Published version | ||||
| Copyright: | Creative Commons: Attribution 4.0 | ||||
| Full Text Status: | Public | ||||
| Subjects: | (A) Swedish standard research categories 2011 > 4 Agricultural Sciences > 401 Agricultural, Forestry and Fisheries > Agricultural Science | ||||
| Keywords: | tree pathogen, Phytophthora, oomycete, effector, RXLR | ||||
| URN:NBN: | urn:nbn:se:slu:epsilon-p-113607 | ||||
| Permanent URL: | http://urn.kb.se/resolve?urn=urn:nbn:se:slu:epsilon-p-113607 | ||||
| Additional ID: |
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| ID Code: | 26012 | ||||
| Faculty: | LTV - Fakulteten för landskapsarkitektur, trädgårds- och växtproduktionsvetenskap | ||||
| Department: | (LTJ, LTV) > Department of Plant Protection Biology | ||||
| Deposited By: | SLUpub Connector | ||||
| Deposited On: | 02 Nov 2021 11:58 | ||||
| Metadata Last Modified: | 02 Nov 2021 12:01 |
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