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Research article - Peer-reviewed, 2022

Parasitic plant small RNA analyses unveil parasite-specific signatures of microRNA retention, loss, and gain

Zangishei, Zahra; Annacondia, Maria Luz; Gundlach, Heidrun; Didriksen, Alena; Bruckmuller, Julien; Salari, Hooman; Krause, Kirsten; Martinez, German

Abstract

Parasitism is a successful life strategy that has evolved independently in several families of vascular plants. The genera Cuscuta and Orobanche represent examples of the two profoundly different groups of parasites: one parasitizing host shoots and the other infecting host roots. In this study, we sequenced and described the overall repertoire of small RNAs from Cuscuta campestris and Orobanche aegyptiaca. We showed that C. campestris contains a number of novel microRNAs (miRNAs) in addition to a conspicuous retention of miRNAs that are typically lacking in other Solanales, while several typically conserved miRNAs seem to have become obsolete in the parasite. One new miRNA appears to be derived from a horizontal gene transfer event. The exploratory analysis of the miRNA population (exploratory due to the absence of a full genomic sequence for reference) from the root parasitic O. aegyptiaca also revealed a loss of a number of miRNAs compared to photosynthetic species from the same order. In summary, our study shows partly similar evolutionary signatures in the RNA silencing machinery in both parasites. Our data bear proof for the dynamism of this regulatory mechanism in parasitic plants.MicroRNAs in parasitic plants reflect their lifestyle.

Published in

Plant Physiology
2022,
Publisher: OXFORD UNIV PRESS INC

      SLU Authors

    • UKÄ Subject classification

      Evolutionary Biology
      Bioinformatics and Systems Biology
      Botany

      Publication identifier

      DOI: https://doi.org/10.1093/plphys/kiac331

      Permanent link to this page (URI)

      https://res.slu.se/id/publ/118588