Open access publications in the SLU publication database

Research article

Bai, Bing and Schiffthaler, Bastian and van der Horst, Sjors and Willems, Leo and Vergara, Alexander and Karstrom, Jacob and Mahler, Niklas and Delhomme, Nicolas and Bentsink, Leonie and Hanson, Johannes (2023). SeedTransNet: a directional translational network revealing regulatory patterns during seed maturation and germination. Journal of Experimental Botany. 74 :7 , 2416-2432
[Research article]

Akhter, Shirin and Westrin, Karl Johan and Zivi, Nathan and Nordal, Veronika and Kretzschmar, Warren W. and Delhomme, Nicolas and Street, Nathaniel R. and Nilsson, Ove and Emanuelsson, Olof and Sundström, Jens (2022). Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway. New Phytologist. 236 :5 , 1951-1963
[Research article]

André, Domenique and Marcon, Alice and Lee, Keh Chien and Goretti, Daniela and Zhang, Bo and Delhomme, Nicolas and Schmid, Markus and Nilsson, Ove (2022). FLOWERING LOCUS T paralogs control the annual growth cycle in Populus trees. Current Biology. 32 :13 , 2988-2996
[Research article]

Chowdhury, Jamil and Kemppainen, Minna and Delhomme, Nicolas and Shutava, Iryna and Zhou, Jingjing and Takahashi Schmidt, Junko and Pardo, Alejandro G. and Lundberg-Felten, Judith (2022). Laccaria bicolor pectin methylesterases are involved in ectomycorrhiza development with Populus tremula x Populus tremuloides. New Phytologist. 236 :2 , 639-655
[Research article]

Liebsch, Daniela and Juvany, Marta and Li, Zhonghai and Wang, Hou-Ling and Ziolkowska, Agnieszka and Chrobok, Daria and Boussardon, Clement and Wen, Xing and Law, Simon R. and Janeckova, Helena and Brouwer, Bastiaan and Linden, Pernilla and Delhomme, Nicolas and Stenlund, Hans and Moritz, Thomas and Gardestrom, Per and Guo, Hongwei and Keech, Olivier (2022). Metabolic control of arginine and ornithine levels paces the progression of leaf senescence. Plant Physiology
[Research article]

Öhlund, Pontus and Delhomme, Nicolas and Hayer, Juliette and Hesson, Jenny C. and Blomström, Anne-Lie (2022). Transcriptome Analysis of an Aedes albopictus Cell Line Single- and Dual-Infected with Lammi Virus and WNV. International Journal of Molecular Sciences. 23 :2 , 875
[Research article]

Schneider, Andreas N. and Sundh, John and Sundström, Görel and Richau, Kerstin and Delhomme, Nicolas and Grabherr, Manfred and Hurry, Vaughan and Street, Nathaniel R. (2021). Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce. mSystems. 6 , e00884-20
[Research article]

Martin, Frida and Halvarsson, Peter and Delhomme, Nicolas and Höglund, Johan and Tyden, Eva (2021). Exploring the beta-tubulin gene family in a benzimidazole-resistant Parascaris univalens population. International Journal for Parasitology: Drugs and Drug Resistance. 17 , 84-91
[Research article]

Seyfferth, Carolin and Wessels, Bernard A. and Vahala, Jorma and Kangasjarvi, Jaakko and Delhomme, Nicolas and Hvidsten, Torgeir R. and Tuominen, Hannele and Lundberg-Felten, Judith (2021). Populus PtERF85 Balances Xylem Cell Expansion and Secondary Cell Wall Formation in Hybrid Aspen. Cells. 10 , 1971
[Research article]

Mahmud, A. K. M. Firoj and Delhomme, Nicolas and Nandi, Soumyadeep and Fallman, Maria (2021). ProkSeq for complete analysis of RNA-Seq data from prokaryotes. Bioinformatics. 37 , 126-128
[Research article]

Papaioannou, Ioannis A. and Dutreux, Fabien and Peltier, France A. and Maekawa, Hiromi and Delhomme, Nicolas and Bardhan, Amit and Friedrich, Anne and Schacherer, Joseph and Knop, Michael (2021). Sex without crossing over in the yeast Saccharomycodes ludwigii. Genome Biology. 22 , 303
[Research article]

Mahboubi, Amir and Delhomme, Nicolas and Haggstrom, Sara and Hanson, Johannes (2021). Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture. Plant Methods. 17 , 92
[Research article]

Bag, Pushan and Lihavainen, Jenna and Delhomme, Nicolas and Riquelme, Thomas and Robinson, Kathryn M. and Jansson, Stefan (2021). An atlas of the Norway spruce needle seasonal transcriptome. Plant Journal. 108 , 1815-1829
[Research article]

Christie, Nanette and Mannapperuma, Chanaka and Ployet, Raphael and van der Merwe, Karen and Mahler, Niklas and Delhomme, Nicolas and Naidoo, Sanushka and Mizrachi, Eshchar and Street, Nathaniel R. and Myburg, Alexander A. (2021). qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE). BMC Bioinformatics. 22 , 595
[Research article]

Sullivan, Alexis R. and Eldfjell, Yrin and Schiffthaler, Bastian and Delhomme, Nicolas and Asp, Torben and Hebelstrup, Kim H. and Keech, Olivier and Oberg, Lisa and Moller, Ian Max and Arvestad, Lars and Street, Nathaniel R. and Wang, Xiao-Ru (2020). The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants. Genome Biology and Evolution. 12 , 3586-3598
[Research article]

Zhang, Bo and Sztojka, Bernadette and Seyfferth, Carolin and Escamez, Sacha and Miskolczi, Pal Csaba and Chantreau, Maxime and Bak, Laszlo and Delhomme, Nicolas and Gorzsas, Andras and Bhalerao, Rishikesh P. and Tuominen, Hannele (2020). The chromatin-modifying protein HUB2 is involved in the regulation of lignin composition in xylem vessels. Journal of Experimental Botany. 71 , 5484-5494
[Research article]