Open access publications in the SLU publication database

A

Abebe, Abiye Shenkut and Alemayehu, Kefyalew and Gizaw, Solomon and Johansson, Anna Maria (2022). Genetic and phenotypic parameters for growth and lamb survival traits of Farta and their crosses with Washera sheep in northwest Ethiopia: Inputs to design of breeding programs. Cogent Food & Agriculture. 8 :1 , 2082043
[Research article]

Abebe, Abiye Shenkut and Alemayehu, Kefyalew and Johansson, Anna Maria and Gizaw, Solomon (2020). Breeding practices and trait preferences of smallholder farmers for indigenous sheep in the northwest highlands of Ethiopia: Inputs to design a breeding program. PLoS ONE. 15 , e0233040 , 1-18
[Research article]

Ablondi, M. and Eriksson, S. and Mikko, Sofia (2022). Haplotype blocks and heterozygosity rich regions on ECA2 in Swedish Warmblood horses. I/In: 12th World Congress on Genetics Applied to Livestock Production (WCGALP), 3-8 July, Netherlands.
[Conference Paper]

Ablondi, Michela and Dadousis, Christos and Vasini, Matteo and Eriksson, Susanne and Mikko, Sofia and Sabbioni, Alberto (2020). Genetic Diversity and Signatures of Selection in a Native Italian Horse Breed Based on SNP Data. Animals. 10 , 1005 , 1-15
[Research article]

Ablondi, Michela and Johnsson, Martin and Eriksson, Susanne and Sabbioni, Alberto and Viklund, Åsa and Mikko, Sofia (2022). Performance of Swedish Warmblood fragile foal syndrome carriers and breeding prospects. Genetics Selection Evolution. 54 :1 , 4
[Research article]

Aboshady, Hadeer M. (2020). Genomic variation and molecular mechanisms of the host response to gastrointestinal nematodes in small ruminants. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2020:13
ISBN 978-91-7760-544-7
eISBN 978-91-7760-545-4
[Doctoral thesis]

Aboshady, Hadeer M. and Mandonnet, Nathalie and Felicite, Yoann and Hira, Julien and Fourcot, Aurore and Barbier, Claude and Johansson, Anna Maria and Jonas, Elisabeth and Bambou, Jean-Christophe (2020). Dynamic transcriptomic changes of goat abomasal mucosa in response to Haemonchus contortus infection. Veterinary Research. 51 , 1-12
[Research article]

Aboshady, Hadeer M. and Mandonnet, Nathalie and Johansson, Anna Maria and Jonas, Elisabeth and Bambou, Jean-Christophe (2021). Genomic variants from RNA-seq for goats resistant or susceptible to gastrointestinal nematode infection. PLoS ONE. 16 , e0248405
[Research article]

Aboshady, Hadeer M. and Stear, M. J. and Johansson, Anna Maria and Jonas, Elisabeth and Bambou, J. C. (2020). Immunoglobulins as Biomarkers for Gastrointestinal Nematodes Resistance in Small Ruminants: A systematic review. Scientific Reports. 10 , 7765
[Article Review/Survey]

Agnvall, B. and Jörngren, M. and Strandberg, Erling and Jensen, P. (2012). Heritability and genetic correlations of fear-related behaviour in Red Junglefowl–possible Implications for early domestication. PloS one. 7 :4 , 1-9
[Research article]

Ahlman, Therese (2010). Organic dairy production. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2010:59
ISBN 978-91-576-7472-2
[Doctoral thesis]

Albertsdóttir, Elsa (2007). Genetic analysis of competition traits in Icelandic horses. Uppsala : Sveriges lantbruksuniv. , Rapport / SLU, Institutionen för husdjursgenetik, 1401-7520 ; 145
ISBN 978-91-576-7195-0
[Licentiate thesis]

Amane, Agraw and Belay, Gurja and Nasser, Yao and Kyalo, Martina and Dessie, Tadelle and Kebede, Adebabay and Getachew, Tesfaye and Entfellner, Jean-Baka Domelevo and Edea, Zewdu and Hanotte, Olivier and Tarekegn, Getinet Mekuriaw (2020). Genome-wide insights of Ethiopian indigenous sheep populations reveal the population structure related to tail morphology and phylogeography. Genes and Genomics. 42 , 1169-1178
[Research article]

Andersson, Leif (2020). Mutations in Domestic Animals Disrupting or Creating Pigmentation Patterns. Frontiers in Ecology and Evolution. 8 , 116 , 1-8
[Article Review/Survey]

Andersson, Lisa S. (2012). Equine trait mapping. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2012:65
ISBN 978-91-576-7712-9
[Doctoral thesis]

Anglart, Dorota and Emanuelson, Ulf and Rönnegård, Lars and Hallen Sandgren, Charlotte (2021). Supplemental materials to Detecting and predicting changes in milk homogeneity using data from automatic milking systems. UNSPECIFIED.

Anglart, Dorota and Emanuelson, Ulf and Rönnegård, Lars and Hallén Sandgren, C. (2021). Detecting and predicting changes in milk homogeneity using data from automatic milking systems. Journal of Dairy Science. 104 :10 , 11009-11017
[Research article]

Anglart, Dorota and Hallen-Sandgren, Charlotte and Emanuelson, Ulf and Rönnegård, Lars (2020). Comparison of methods for predicting cow composite somatic cell counts. Journal of Dairy Science. 103 , 8433-8442
[Research article]

Anglart, Dorota and Hallen-Sandgren, Charlotte and Waldmann, Patrik and Wiedemann, Martin and Emanuelson, Ulf (2020). Modeling cow somatic cell count using sensor data as input to generalized additive models. Journal of Dairy Research. 87 , PII S0022029920000692 , 282-289
[Research article]

Arendt, Maja and Ambrosen, Aime and Fall, Tove and Kierczak, Marcin and Tengvall, Katarina and Meadows, Jennifer R. S. and Karlsson, Asa and Lagerstedt, Anne-Sofie and Bergstrom, Tomas and Andersson, Göran and Lindblad-Toh, Kerstin and Hagman, Ragnvi (2021). The ABCC4 gene is associated with pyometra in golden retriever dogs. Scientific Reports. 11 , 16647
[Research article]

Arvelius, Per (2015). Analyser av MT från ett avelsperspektiv. Uppsala: (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet. Rapport / SLU, Institutionen för husdjursgenetik ; 151
[Report]

Arvelius, Per (2014). Genetic evaluation of behaviour in dogs. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:59
ISBN 978-91-576-8066-2
eISBN 978-91-576-8067-9
[Doctoral thesis]

Axelsson, Erik and Ljungvall, Ingrid and Bhoumik, Priyasma and Conn, Laura Bas and Muren, Eva and Ohlsson, Åsa and Olsen, Lisbeth Hoier and Engdahl, Karolina and Hagman, Ragnvi and Hanson, Jeanette and Kryvokhyzha, Dmytro and Pettersson, Mats and Grenet, Olivier and Moggs, Jonathan and Del Rio-Espinola, Alberto and Epe, Christian and Taillon, Bruce and Tawari, Nilesh and Mane, Shrinivas and Hawkins, Troy and Hedhammar, Åke and Gruet, Philippe and Häggström, Jens and Lindblad-Toh, Kerstin (2021). The genetic consequences of dog breed formation-Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels. PLOS GENETICS. 17
[Research article]

B

Balinandi, Stephen and Chitimia-Dobler, Lidia and Grandi, Giulio and Nakayiki, Teddy and Kabasa, William and Bbira, Johnson and Lutwama, Julius J. and Bakkes, Deon K. and Malmberg, Maja and Mugisha, Lawrence (2020). Morphological and molecular identification of ixodid tick species (Acari: Ixodidae) infesting cattle in Uganda. Parasitology Research. 119 , 2411-2420
[Research article]

Balinandi, Stephen and Hayer, Juliette and Cholleti, Harindranath and Wille, Michelle and Lutwama, Julius J. and Malmberg, Maja and Mugisha, Lawrence (2022). Identification and molecular characterization of highly divergent RNA viruses in cattle, Uganda. Virus Research. 313 , 198739
[Research article]

Balinandi, Stephen and Whitmer, Shannon and Mulei, Sophia and Nyakarahuka, Luke and Tumusiime, Alex and Kyondo, Jackson and Baluku, Jimmy and Mutyaba, Joseph and Mugisha, Lawrence and Malmberg, Maja and Lutwama, Julius and Shoemaker, Trevor R. and Klena, John D. (2022). Clinical and Molecular Epidemiology of Crimean-Congo Hemorrhagic Fever in Humans in Uganda, 2013-2019. American Journal of Tropical Medicine and Hygiene. 106 :1 , 88-98
[Research article]

Balinandi, Stephen and von Bromssen, Claudia and Tumusiime, Alex and Kyondo, Jackson and Kwon, Hyesoo and Monteil, Vanessa M. and Mirazimi, Ali and Lutwama, Julius and Mugisha, Lawrence and Malmberg, Maja (2021). Serological and molecular study of Crimean-Congo Hemorrhagic Fever Virus in cattle from selected districts in Uganda. Journal of Virological Methods. 290 , 114075
[Research article]

Baltrusis, Paulius and Charvet, Claude L. and Halvarsson, Peter and Mikko, Sofia and Höglund, Johan (2021). Using droplet digital PCR for the detection of hco-acr-8b levamisole resistance marker in H. contortus. International Journal for Parasitology: Drugs and Drug Resistance. 15 , 168-176
[Research article]

Baranowska Körberg, Izabella (2011). Mapping trait genes in dogs. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:69
ISBN 978-91-576-7613-9
[Doctoral thesis]

Barbato, Mario and Hailer, Frank and Upadhyay, Maulik and Del Corvo, Marcello and Colli, Licia and Negrini, Riccardo and Kim, Eui-Soo and Crooijmans, Richard P. M. A. and Sonstegard, Tad and Ajmone-Marsan, Paolo (2020). Adaptive introgression from indicine cattle into white cattle breeds from Central Italy. Scientific Reports. 10 , 1279
[Research article]

Barria, Agustin and Benzie, John A. H. and Houston, Ross D. and De Koning, Dirk-Jan and de Verdal, Hugues (2021). Genomic Selection and Genome-wide Association Study for Feed-Efficiency Traits in a Farmed Nile Tilapia (Oreochromis niloticus) Population. Frontiers in Genetics. 12 , 737906
[Research article]

Bengtsson, Christian and Bengtsson, Christian and Stalhammar, H. and Thomasen, J. R. and Eriksson, Susanne and Fikse, Freddy and Strandberg, Erling (2022). Mating allocations in Nordic Red Dairy Cattle using genomic information. Journal of Dairy Science. 105 :2 , 1281-1297
[Research article]

Bengtsson, Christian and Stalhammar, H. and Strandberg, Erling and Eriksson, Susanne and Fikse, W. F. (2020). Association of genomically enhanced and parent average breeding values with cow performance in Nordic dairy cattle. Journal of Dairy Science. 103 , 6383-6391
[Research article]

Berg, Charlotte and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Jarmar, Anna and Keeling, Linda and Lindsjö, Johan and Lundmark Hedman, Frida and Rydhmer, Lotta and Sandberg, Eva and Seiler, Andreas and Steen, Margareta and Åsbjer, Elina (2021). Djurvälfärden vid träning och prov av jakthundar i och utanför vilthägn med vildsvin, älg, björn och hare. (LTJ, LTV) > Department of Biosystems and Technology (from 130101)
(NL, NJ) > Dept. of Ecology
(S) > Dept. of Ecology
Common Units > Vice-Chancellor's Office
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2021:5
[Report]

Berg, Lotta and Axelsson, Michael and Gräns, Albin and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Jarmar, Anna and Keeling, Linda and Lundmark Hedman, Frida and Rydhmer, Lotta and Sandberg, Eva and Steen, Margareta and Wall, Helena and Åsbjer, Elina (2021). Bedövning vid slakt av fisk. (LTJ, LTV) > Department of Biosystems and Technology (from 130101)
Common Units > Vice-Chancellor's Office
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2021:1
[Report]

Berg, Lotta and Brunberg, Emma and Hansson, Helena and Herlin, Anders Henrik and Hultgren, Jan and Högberg, Niclas and Jacobson, Magdalena and Jamar, Anna and Keeling, Linda and Lunner Kolstrup, Christina and Rydberg, Anna and Rydhmer, Lotta and Sandberg, Eva Maria Viola and Skarin, Anna and Steen, Margareta and Wall, Helena (2020). Digital tillsynsteknik i djurhållning utomhus. (LTJ, LTV) > Department of Work Science, Business Economics, and Environmental Psychology (until 2020)
(LTJ, LTV) > Department of Biosystems and Technology (from 130101)
(NL, NJ) > Dept. of Economics
(VH) > Department of Biomedical Science and Veterinary Public Health
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2020:4
[Report]

Berg, Lotta and De Koning, Dirk-Jan and Fall, Nils and Hansson, Helena and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Keeling, Linda and Lunner Kolstrup, Christina and Lidfors, Lena and Lindqvist, Hanna and Malmqvist, Jens and Peura, Jussi and Sandberg, Eva and Steen, Margareta and Wall, Helena (2020). Minkhållning i Sverige. (NL, NJ) > Dept. of Economics
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2020:2
[Report]

Berg, Lotta and De Koning, Dirk-Jan and Fall, Nils and Hansson, Helena and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Keeling, Linda and Lunner Kolstrup, Christina and Littorin, Linnea and Sandberg, Eva and Steen, Margareta and Wall, Helena and Gunnarsson, Stefan and Wallenbeck, Anna and Wallgren, Per (2019). Yttrande från SLUs vetenskapliga råd för djurskydd om djurskydd inom grisuppfödning. Uppsala.

Berg, Lotta and De Koning, Dirk-Jan and Fall, Nils and Hansson, Helena and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Keeling, Linda and Lunner Kolstrup, Christina and Littorin, Linnea and Sandberg, Eva and Steen, Margareta and Wall, Helena and Hirsch, Elin and Jensen, Per and Lindsjö, Johan and Rehn, Therese (2018). Yttrande från SLUs vetenskapliga råd för djurskydd om hållande av hund och katt. Uppsala.

Berg, Lotta and De Koning, Dirk-Jan and Fall, Nils and Hansson, Helena and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Keeling, Linda and Lunner Kolstrup, Christina and Littorin, Linnea and Sandberg, Eva Maria Viola and Steen, Margareta and Wall, Helena and Lidfors, Lena and Malmqvist, Jens and Andersson, Märit and Lindqvist, Hanna and Peura, Jussi (2018). Yttrande från SLUs vetenskapliga råd för djurskydd om angående uppdrag dnr: 5.2.17-03728/2018, Utvärdering av minkhållningen i Sverige. Uppsala.

Berg, Lotta and Gunnarsson, Stefan and De Koning, Dirk-Jan and Fall, Nils and Hansson, Helena and Hultgren, Jan and Jacobson, Magdalena and Keeling, Linda and Lunner Kolstrup, Christina and Sandberg, Eva and Steen, Margareta and Wall, Helena and Wallenbeck, Anna and Wallgren, Per (2020). Djurskydd inom grisuppfödning. (LTJ, LTV) > Department of Work Science, Business Economics, and Environmental Psychology (until 2020)
(NL, NJ) > Dept. of Economics
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2020:3
[Report]

Berg, Lotta and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Jarmar, Anna and Keeling, Linda and Lindsjö, Johan and Lundmark Hedman, Frida and Rydhmer, Lotta and Hydbring-Sandberg, Eva and Seiler, Andreas and Steen, Margareta and Åsbjer, Elina and Österman, Sara (2021). Grävlingars lidande vid grytanlagsprov med levande grävling. (LTJ, LTV) > Department of Biosystems and Technology (from 130101)
(NL, NJ) > Dept. of Ecology
(S) > Dept. of Ecology
Common Units > Vice-Chancellor's Office
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2021:3
[Report]

Berg, Lotta and Von Essen, Erica and Göransson, Lina and Herlin, Anders Henrik and Hultgren, Jan and Jacobson, Magdalena and Jarmar, Anna and Jerlström, Josefine and Keeling, Linda and Lindsjö, Johan and Lundmark Hedman, Frida and Rydhmer, Lotta and Röcklinsberg, Helena and Sandberg, Eva and Steen, Margareta and Åsbjer, Elina and Österman, Sara (2021). Jakt med pil och båge. (NL, NJ) > Dept. of Urban and Rural Development
(LTJ, LTV) > Dept. of Urban and Rural Development
(LTJ, LTV) > Department of Biosystems and Technology (from 130101)
Common Units > Vice-Chancellor's Office
(VH) > Dept. of Animal Environment and Health
(VH) > Dept. of Clinical Sciences
(VH) > Dept. of Anatomy, Physiology and Biochemistry
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics
(VH) > SCAW Nationellt centrum för djurvälfärd, Sveriges lantbruksuniversitet. Rapporter från SLU:s vetenskapliga råd för djurskydd ; 2
[Report]

Berglund, Britt and Eriksson, Maria (2021). Ny studie visar att SRB har lägre dräktighetsförluster än Holstein. SRB-bladet , 21-21
[Magazine article]

Bernhardt, Nadine and Memic, Fatima and Velica, Anna and Tran, Michelle A. and Vieillard, Jennifer and Sayyab, Shumaila and Chersa, Taha and Andersson, Leif and Whelan, Patrick J. and Boije, Henrik and Kullander, Klas (2022). Hop Mice Display Synchronous Hindlimb Locomotion and a Ventrally Fused Lumbar Spinal Cord Caused by a Point Mutation in Ttc26. ENeuro. 9 :2 , ENEURO.0518-21.2022
[Research article]

Bianchi, Matteo and Rafati, Nima and Karlsson, Asa and Muren, Eva and Rubin, Carl-Johan and Sundberg, Katarina and Andersson, Göran and Kampe, Olle and Hedhammar, Åke and Lindblad-Toh, Kerstin and Rosengren Pielberg, Gerli (2020). Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs. BMC Genomics. 21 , 307 , 1-16
[Research article]

Birhanie, M. and Alemayehu, K. and Tarekegn, Getinet Mekuriaw (2019). Morphological Characterization of Goat Populations in Central Zone of Tigray, Ethiopia. Tropical animal science journal. 42 , 81-89
[Research article]

Bittante, Giovanni and Savoia, Simone and Cecchinato, Alessio and Pegolo, Sara (2021). Phenotypic and genetic variation of ultraviolet-visible-infrared spectral wavelengths of bovine meat. Scientific Reports. 11 , 13946
[Research article]

Bonifazi, Renzo and Calus, Mario P. L. and ten Napel, Jan and Veerkamp, Roel F. and Michenet, Alexis and Savoia, Simone and Vandenplas, Jeremie (2022). International single-step SNPBLUP beef cattle evaluations for Limousin weaning weight. Genetics Selection Evolution. 54 :1 , 57
[Research article]

Bonow, Sandra and Eriksson, Susanne and Thorén Hellsten, Emma and Viklund, Åsa (2023). Consequences of specialized breeding in the Swedish Warmblood horse population. Journal of Animal Breeding and Genetics. 140 :1 , 79-91
[Research article]

Bottani, Gabriela (2020). Bolivian creole cattle: population structure, genetic diversity and management practices. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2020:7
ISBN 978-91-7760-532-4
eISBN 978-91-7760-533-1
[Doctoral thesis]

Bottani, Gabriela and Bottani, Gabriela and Jonas, Elisabeth and Strandberg, Erling (2022). Relevance of the production system for the sustainability of conservation and breeding programs for the Creole cattle in Pasorapa, Bolivia. Discover Sustainability. 3 :1 , 19
[Research article]

Braam, Åsa (2011). Breeding for durable riding horses using competition statistics. Uppsala : Sveriges lantbruksuniv. , Rapport / SLU, Institutionen för husdjursgenetik, 1401-7520 ; 147
ISBN 978-91-576-9034-0
[Licentiate thesis]

Braganca, F. M. Serra and Broome, S. and Rhodin, Marie and Björnsdottir, S. and Gunnarsson, V. and Voskamp, J. P. and Persson Sjödin, Emma and Back, W. and Lindgren, Gabriella and Novoa, Miguel and Roepstorff, C. and van der Zwaag, B. J. and Van Weeren, P. R. and Hernlund, Elin (2020). Improving gait classification in horses by using inertial measurement unit (IMU) generated data and machine learning. Scientific Reports. 10 , 17785
[Research article]

Brandt, Christian and Bongcam-Rudloff, Erik and Müller, Bettina (2020). Abundance Tracking by Long-Read Nanopore Sequencing of Complex Microbial Communities in Samples from 20 Different Biogas/Wastewater Plants. Applied Sciences. 10 , 7518
[Research article]

Bremer, Hanna and Landegren, Nils and Sjöberg, Roland and Hallgren, Åsa and Renneker, Stefanie and Lattwein, Erik and Leonard, Dag and Eloranta, Maija-Leena and Rönnblom, Lars and Nordmark, Gunnel and Nilsson, Peter and Andersson, Göran and Lilliehöök, Inger and Lindblad-Toh, Kerstin and Kämpe, Olle and Hansson-Hamlin, Helene (2018). ILF2 and ILF3 are autoantigens in canine systemic autoimmune disease. Scientific Reports. 8 , 1-9
[Research article]

C

Cadiz, Maria and López, Maria-Eugenia and Diaz-Dominguez, Diego and Caceres, Giovanna and Yoshida, Grazyella M. and Gomez-Uchida, Daniel and Yanez, Jose M. (2020). Whole genome re-sequencing reveals recent signatures of selection in three strains of farmed Nile tilapia (Oreochromis niloticus). Scientific Reports. 10 , 11514 , 1-14
[Research article]

Canario, Laurianne and Bijma, Piter and David, Ingrid and Camerlink, Irene and Martin, Alexandre and Rauw, Wendy Mercedes and Flatres-Grall, Loic and Zande, Lisette van der and Turner, Simon P. and Larzul, Catherine and Rydhmer, Lotta (2020). Prospects for the Analysis and Reduction of Damaging Behaviour in Group-Housed Livestock, With Application to Pig Breeding. Frontiers in Genetics. 11 , 611073
[Article Review/Survey]

Canario, Laurianne and Lundeheim, Nils and Bijma, Piter (2017). The early-life environment of a pig shapes the phenotypes of its social partners in adulthood. Heredity. 118 , 534-541
[Research article]

Carlborg, Örjan (2002). New methods for mapping quantitative trait loci. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Veterinaria, 1401-6257 ; 121
ISBN 91-576-6362-9
[Doctoral thesis]

Carlström, Caroline (2014). Genetic variation of in-line recorded milkability traits and associations with udder conformation and health in Swedish dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:22
ISBN 978-91-576-7992-5
eISBN 978-91-576-7993-2
[Doctoral thesis]

Carlén, Emma (2008). Genetic evaluation of clinical mastitis in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2008:63
ISBN 978-91-85913-96-1
[Doctoral thesis]

Carneiro, Miguel and Vieillard, Jennifer and Andrade, Pedro and Boucher, Samuel and Afonso, Sandra and Blanco-Aguiar, Jose A. and Santos, Nuno and Branco, Joao and Esteves, Pedro J. and Ferrand, Nuno and Kullander, Klas and Andersson, Leif (2021). A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits. PLOS GENETICS. 17 , e1009429
[Research article]

Chalkias, Helena (2013). Genetic and clinical studies of teat traits in the pig. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2013:79
ISBN 978-91-576-7896-6
eISBN 978-91-576-7897-3
[Doctoral thesis]

Chankeaw, Wiruntita and Lignier, Sandra and Richard, Christophe and Ntallaris, Theodoros and Raliou, Mariam and Guo, Yongzhi and Plassard, Damien and Bevilacqua, Claudia and Sandra, Olivier and Andersson, Göran and Humblot, Patrice and Charpigny, Gilles (2021). Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (1): specific signatures of stromal, glandular and luminal epithelial cells. BMC Genomics. 22 :1 , 451
[Research article]

Chankeaw, Wiruntita and Lignier, Sandra and Richard, Christophe and Ntallaris, Theodoros and Raliou, Mariam and Guo, Yongzhi and Plassard, Damien and Bevilacqua, Claudia and Sandra, Olivier and Andersson, Göran and Humblot, Patrice and Charpigny, Gilles (2021). Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells. BMC Genomics. 22 , 450
[Research article]

Chen, Junfeng and Bi, Huijuan and Pettersson, Mats E. and Sato, Daiki X. and Fuentes-Pardo, Angela P. and Mo, Chunheng and Younis, Shady and Wallerman, Ola and Jern, Patric and Moles, Gregorio and Gomez, Ana and Kleinau, Gunnar and Scheerer, Patrick and Andersson, Leif (2021). Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring. Communications biology. 4 , 795
[Research article]

Chozas, Adrian Calvo and Mahjani, Behrang and Ronnegard, Lars and Rönnegård, Lars (2022). Family History of Breast Cancer Is Associated with Elevated Risk of Prostate Cancer: Evidence for Shared Genetic Risks. Human Heredity. 87 :1 , 12-19
[Research article]

Churakov, Mikhail and Silvera, Anna and Gussmann, Maya and Nielsen, Per Peetz (2021). Parity and days in milk affect cubicle occupancy in dairy cows. Applied Animal Behaviour Science. 244 , 105494
[Research article]

Clasen, Julie (2021). Crossbreeding as a strategy in dairy cattle herds. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-7760-839-4
eISBN 978-91-7760-840-0
[Doctoral thesis]

Clasen, Julie and Bengtsson, Christian and Bengtsson, Christian and Nordström Källström, Helena and Strandberg, Erling and Fikse, Freddy and Rydhmer, Lotta (2021). Dairy cattle farmers' preferences for different breeding tools. Animal. 15 :12 , 100409
[Research article]

Clasen, Julie and Fikse, Freddy and Kargo, M. and Rydhmer, Lotta and Strandberg, Erling and Ostergaard, S. (2020). Economic consequences of dairy crossbreeding in conventional and organic herds in Sweden. Journal of Dairy Science. 103 , 514-528
[Research article]

Clasen, Julie and Fikse, Freddy and Kargo, Morten and Strandberg, Erling and Østergaard, Søren and Rydhmer, Lotta (2020). Korsning med mjölkkor – effekter på besättningsdynamik och ekonomiskt resultat. (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet. Rapport / SLU, Institutionen för husdjursgenetik ; 152
[Report]

Clasen, Julie and Kargo, M. and Fikse, Freddy and Strandberg, Erling and Wallenbeck, Anna and Ostergaard, S. and Rydhmer, Lotta (2021). Conservation of a native dairy cattle breed through terminal crossbreeding with commercial dairy breeds. Acta Agriculturae Scandinavica, Section A - Animal Science. 70 , 1-12
[Research article]

Clasen, Julie and Kargo, M. and Østergaard, S. and Fikse, W.F. and Fikse, Freddy and Rydhmer, Lotta and Strandberg, Erling (2021). Genetic consequences of terminal crossbreeding, genomic test, sexed semen, and beef semen in dairy herds. Journal of Dairy Science. 104 , 8062-8075
[Research article]

Cojkic, Aleksandar and Niazi, Adnan and Guo, Yongzhi and Hallap, Triin and Padrik, Peeter and Morrell, Jane (2021). Identification of bull semen microbiome by 16S sequencing and possible relationships with fertility. Microorganisms. 9 , 2431
[Research article]

Cordero, Juan (2020). Genetics of colostrum, milk and serum antibodies in dairy cattle: implications for health and production. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2020:4
ISBN 978-91-7760-526-3
eISBN 978-91-7760-527-0
[Doctoral thesis]

Cordero, Juan and De Koning, Dirk-Jan and Tråven, Madeleine and de Haan, Therese and Jouffroy, Mathilde and Larsson, Andrea and Myrthe, Aline and Arts, Joop A. J. and Parmentier, Henk K. and Bovenhuis, Henk and Wensman, Jonas Johansson (2022). Genetic parameters of colostrum and calf serum antibodies in Swedish dairy cattle. Genetics Selection Evolution. 54 , 68
[Research article]

Corrales, Roldan (2011). Population structure and phenotypic characterization as a basis for conservation and sustainable use of Reyna Creole Cattle in Nicaragua. Diss. (sammanfattning/summary) Uppsala, Sweden : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:47
ISBN 978-91-576-7591-0
[Doctoral thesis]

D

Da Silva, Vinicius and Laine, Veronika and Bosse, Mirte and van Oers, Kees and Gienapp, Philip and Visser, Marcel E and Crooijmans, Richard P.M.A. and Groenen, Martien A.M. (2016). The copy number variations at genes related to neuronal functions under selection in great tit.
[Conference poster]

Da Silva, Vinicius and Ramos, Marcel and Groenen, Martien and Crooijmans, Richard and Johansson, Anna Maria and Regitano, Luciana and Coutinho, Luiz and Zimmer, Ralf and Waldron, Levi and Geistlinger, Ludwig (2020). CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinformatics. 36 , 972-973
[Other publication in scientific journal]

Dadousis, Christos and Somavilla, Adriana and Ilska, Joanna J. and Johnsson, Martin and Batista, Lorena and Mellanby, Richard J. and Gottardo, Paolo and Headon, Denis and Whalen, Andrew and Wilson, David and Dunn, Ian C. and Gorjanc, Gregor and Kranis, Andreas and Hickey, John M. (2021). A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens. Genetics Selection Evolution. 53 , 70
[Research article]

Darweesh, Mahmoud and Younis, Shady and Hajikhezri, Zamaneh and Ali, Arwa and Jin, Chuan and Punga, Tanel and Gupta, Soham and Essand, Magnus and Andersson, Leif and Akusjaervi, Goran (2022). ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression. Frontiers in Immunology. 13 , 1002823
[Research article]

De Koning, Dirk-Jan and Dominguez-Gasca, Nazaret and Fleming, Robert H. and Gill, Andrew and Kurian, Dominic and Law, Andrew and McCormack, Heather A. and Morrice, David and Sanchez-Rodriguez, Estefania and Rodriguez-Navarro, Alejandro B. and Preisinger, Rudolf and Schmutz, Matthias and Smidova, Veronica and Turner, Frances and Wilson, Peter W. and Zhou, Rongyan and Dunn, Ian C. (2020). An eQTL in the cystathionine beta synthase gene is linked to osteoporosis in laying hens. Genetics Selection Evolution. 52 , 1-17
[Research article]

De Panis, D. and Dopazo, H. and Bongcam-Rudloff, Erik and Conesa, A. and Hasson, E. (2022). Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species. BMC Genomics. 23 , 515
[Research article]

Desta, Zeratsion Abera and Kolano, Bozena and Shamim, Zeeshan and Armstrong, Susan J. and Rewers, Monika and Sliwinska, Elwira and Kushwaha, Sandeep Kumar and Parkin, Isobel A. P. and Ortiz Rios, Rodomiro Octavio and De Koning, Dirk-Jan (2019). Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes. Scientific Reports. 9 , 1-14
[Research article]

Druml, Thomas and Brem, Gottfried and Velie, Brandon and Lindgren, Gabriella and Horna, Michaela and Ricard, Anne and Grilz-Seger, Gertrud (2021). Equine vitiligo-like depigmentation in grey horses is related to genes involved in immune response and tumor metastasis. BMC Veterinary Research. 17 , 336
[Research article]

Duchemin, Sandrine Isolde (2016). Mapping and fine-mapping of genetic factors affecting bovine milk composition. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:39
ISBN 978-91-576-8580-3
eISBN 978-91-576-8581-0
[Doctoral thesis]

Dunn, Ian C. and De Koning, Dirk-Jan and McCormack, Heather A. and Fleming, Robert H. and Wilson, Peter W. and Andersson, Björn and Schmutz, Matthias and Benavides, Cristina and Dominguez-Gasca, Nazaret and Sanchez-Rodriguez, Estefania and Rodriguez-Navarro, Alejandro B. (2021). No evidence that selection for egg production persistency causes loss of bone quality in laying hens. Genetics Selection Evolution. 53 , 11
[Research article]

da Silva, Vinicius Henrique (2020). Structural variants in the great tit genome and their effect on seasonal timing. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2020:1
ISBN 978-91-7760-520-1
eISBN 978-91-7760-521-8
[Doctoral thesis]

E

Ek, Weronica (2011). Genetic analysis of autoimmune and metabolic traits in chickens. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:73
ISBN 978-91-576-7617-7
[Doctoral thesis]

Eken Asp, Helena (2015). Everyday behaviour in dogs. Uppsala : Sveriges lantbruksuniv.
ISBN 978-91-576-9332-7
eISBN 978-91-576-9333-4
[Licentiate thesis]

Ekerljung, Marie (2012). Candidate gene effects on beef quality. Uppsala : Sveriges lantbruksuniv. , Rapport / SLU, Institutionen för husdjursgenetik, 1401-7520 ; 148
ISBN 978-91-576-9101-9
[Licentiate thesis]

Ekesten, Björn and Mäkeläinen, Suvi and Makelainen, Suvi and Ellis, Stuart and Kjellstrom, Ulrika and Bergström, Tomas F. (2022). Abnormal Appearance of the Area Centralis in Labrador Retrievers With an ABCA4 Loss-of-function Mutation. Translational Vision Science & Technology. 11 :2 , 36
[Research article]

Enbody, Erik D. and Pettersson, Mats E. and Sprehn, C. Grace and Palm, Stefan and Wickström, Håkan and Andersson, Leif (2021). Ecological adaptation in European eels is based on phenotypic plasticity. Proceedings of the National Academy of Sciences of the United States of America. 118 , e2022620118
[Research article]

Enbody, Erik D. and Sprehn, C. Grace and Abzhanov, Arhat and Bi, Huijuan and Dobreva, Mariya P. and Osborne, Owen G. and Rubin, Carl-Johan and Grant, Peter R. and Grant, B. Rosemary and Andersson, Leif (2021). A multispecies BCO2 beak color polymorphism in the Darwin's finch radiation. Current Biology. 31 , 5597-+
[Research article]

Engblom, Linda (2008). Culling and mortality among Swedish crossbred sows. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2008:7
ISBN 978-91-85913-40-4
[Doctoral thesis]

Engel, Philipp and Rodrigues De Miranda, Joachim and Granberg, Fredrik and Hayer, Juliette and Dainat, Benjamin (2016). The bee microbiome: Impact on bee health and model for evolution and ecology of host-microbe interactions. mBIO. 7 :2 , 1-9
[Article Review/Survey]

F

Farrell, Edward D. D. and Andersson, Leif and Bekkevold, Dorte and Carlsson, Jens and Clarke, Maurice W. W. and Egan, Afra and Folkvord, Arild and Gras, Michael and Maersk Lusseau, Susan and Mackinson, Steven and Nolan, Cormac and O’Connell, Steven and O'Malley, Michael and Pastoors, Martin and Pettersson, Mats E. E. and White, Emma (2022). A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c. Royal Society Open Science. 9 :9 , 220453
[Research article]

Felleki, Majbritt (2014). Genetic heteroscedasticity for domestic animal traits. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:43
ISBN 978-91-576-8034-1
eISBN 978-91-576-8035-8
[Doctoral thesis]

Fogelholm, J. and Henriksen, R. and Höglund, A. and Huq, N. and Johnsson, Martin and Lenz, R. and Jensen, P. and Wright, D. (2020). CREBBP and WDR 24 Identified as Candidate Genes for Quantitative Variation in Red-Brown Plumage Colouration in the Chicken. Scientific Reports. 10 , 1161 , 1-10
[Research article]

Follby, Anna and Pettersson, Anna and Ljungvall, Ingrid and Ohlsson, Åsa and Häggström, Jens (2022). A Questionnaire Survey on Long-Term Outcomes in Cats Breed-Screened for Feline Cardiomyopathy. Animals. 12 :20 , 2782
[Research article]

Frosth, Sara and Karlsson Lindsjö, Oskar and Niazi, Adnan and Fernström, Lise-Lotte and Hansson, Ingrid (2020). Identification of Transmission Routes of Campylobacter and On-Farm Measures to Reduce Campylobacter in Chicken. Pathogens. 9 , 363 , 1-17
[Research article]

G

Genova, Francesca and Nonnis, Simona and Maffioli, Elisa and Tedeschi, Gabriella and Strillacci, Maria Giuseppina and Carisetti, Michela and Sironi, Giuseppe and Cupaioli, Francesca Anna and Di Nanni, Noemi and Mezzelani, Alessandra and Mosca, Ettore and Helps, Christopher R. and Leegwater, Peter A. J. and Dorso, Laetitia and Buckley, Reuben M. and Aberdein, Danielle and Alves, Paulo C. and Ohlsson Andersson, Åsa and Barsh, Gregory S. and Bellone, Rebecca R. and Bergström, Tomas F. and Boyko, Adam R. and Brockman, Jeffrey A. and Casal, Margret L. and Castelhano, Marta G. and Distl, Ottmar and Dodman, Nicholas H. and Ellinwood, N. Matthew and Fogle, Jonathan E. and Forman, Oliver P. and Garrick, Dorian J. and Ginns, Edward and Haase, Bianca and Häggström, Jens and Harvey, Robert J. and Hasegawa, Daisuke and Hernandez, Isabel and Hytonen, Marjo K. and Kaukonen, Maria and Kaelin, Christopher B. and Kosho, Tomoki and Leclerc, Emilie and Lear, Teri L. and Leeb, Tosso and Li, Ronald H. L. and Lohi, Hannes and Magnuson, Mark A. and Malik, Richard and Mane, Shrinivasrao P. and Munday, John S. and Murphy, William J. and Pedersen, Niels C. and Peterson-Jones, Simon M. and Rothschild, Max F. and Rusbridge, Clare and Shapiro, Beth and Stern, Joshua A. and Swanson, William F. and Terio, Karen A. and Todhunter, Rory J. and Warren, Wesley C. and Wilcox, Elizabeth A. and Wildschutte, Julia H. and Yu, Yoshihiko and Lyons, Leslie A. and Longeri, Maria (2021). Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. Scientific Reports. 11 , 8339
[Research article]

Ghazal, Awaisa (2014). Bioinformatics studies on the mechanisms of gene regulation in vertebrates. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:82
ISBN 978-91-576-8112-6
eISBN 978-91-576-8113-3
[Doctoral thesis]

Ghoreishifar, Seyed Mohammad and Eriksson, Susanne and Johansson, Anna and Khansefid, Majid and Moghaddaszadeh-Ahrabi, Sima and Parna, Nahid and Davoudi, Pourya and Javanmard, Arash (2020). Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds. Genetics Selection Evolution. 52 , 52 , 1-15
[Research article]

Ghoreishifar, Seyed Mohammad and Rochus, Christina Marie and Moghaddaszadeh-Ahrabi, Sima and Davoudi, Pourya and Salek Ardestani, Siavash and Johansson, Anna M. and Zinovieva, Natalia A. and Deniskova, Tatiana E. and Johansson, Anna Maria (2021). Shared Ancestry and Signatures of Recent Selection in Gotland Sheep. Genes. 12 , 433
[Research article]

Ghosh, Sharmila and Davis, Brian W. and Rosengren, Maria and Jevit, Matthew J. and Castaneda, Caitlin and Arnold, Carolyn and Jaxheimer, Jay and Love, Charles C. and Varner, Dickson D. and Lindgren, Gabriella and Wade, Claire M. and Raudsepp, Terje (2020). Characterization of a Homozygous Deletion of Steroid Hormone Biosynthesis Genes in Horse Chromosome 29 as a Risk Factor for Disorders of Sex Development and Reproduction. Genes. 11 , 251 , 1-15
[Research article]

Gourlé, Hadrien (2020). A dive into the coral microbiome. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2020:29
ISBN 978-91-7760-576-8
eISBN 978-91-7760-577-5
[Doctoral thesis]

Gozalo-Marcilla, Miguel and Buntjer, Jaap and Johnsson, Martin and Batista, Lorena and Diez, Federico and Chen, Ching-Yi and Werner, Christian R. and Gorjanc, Gregor and Mellanby, Richard J. and Hickey, John M. and Ros-Freixedes, Roger (2021). Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds. Genetics Selection Evolution. 53 , 76
[Research article]

Gullstrand, Patricia and Strandberg, Erling and Båge, Renee and Christensen, J.M. and Berglund, Britt (2021). Genetic parameters for reproductive losses estimated from in-line milk progesterone profiles in Swedish dairy cattle. Journal of Dairy Science. 104 , 3231-3239
[Research article]

Gustafsson, Robert and Eckhard, Ulrich and Ye, Weihua and Enbody, Erik D. and Pettersson, Mats and Jemth, Per and Andersson, Leif and Selmer, Maria (2020). Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding. Biomolecules. 10 , 1631
[Research article]

H

Hagenblad, Jenny and Vanhala, Tytti and Madhavan, Sharmila and Leino, Matti W. (2022). Protein content and HvNAM alleles in Nordic barley (Hordeum vulgare) during a century of breeding. HEREDITAS. 159 :1 , 12
[Research article]

Hallen-Sandgren, Charlotte and Anglart, Dorota and Klaas, I.C. and Rönnegård, Lars and Emanuelson, Ulf (2021). Supplemental materials to Homogeneity density scores of quarter milk in automatic milking systems. UNSPECIFIED.

Hallén Sandgren, C. and Anglart, D. and Klaas, I.C. and Rönnegård, Lars and Emanuelson, Ulf (2021). Homogeneity density scores of quarter milk in automatic milking systems. Journal of Dairy Science. 104 , 10121-10130
[Research article]

Han, Fan and Jamsandekar, Minal and Pettersson, Mats E. and Su, Leyi and Fuentes-Pardo, Angela P. and Davis, Brian W. and Bekkevold, Dorte and Berg, Florian and Casini, Michele and Dahle, Geir and Farrell, Edward D. and Folkvord, Arild and Andersson, Leif (2020). Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci. eLife. 9 , e61076
[Research article]

Hansen Axelsson, Helen (2013). Breeding for sustainable milk production. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2013:43
ISBN 978-91-576-7825-6
[Doctoral thesis]

Hansson, Ida and Silvera, Anna and Ren, Keni and Woudstra, S. and Skarin, Anna and Fikse, F. and Nielsen, P.P. and Rönnegård, Lars (2022). Supplementary materials to: Cow characteristics associated with the variation in number of contacts between dairy cows. Journal of Dairy Science. UNSPECIFIED.

Hayer, Juliette and Wille, Michelle and Font, Alejandro and Gonzalez-Aravena, Marcelo and Norder, Helene and Malmberg, Maja (2021). Four novel picornaviruses detected in Magellanic Penguins (Spheniscus magellanicus) in Chile. Virology. 560 , 116-123
[Research article]

Henriksen, Rie and Höglund, Andrey and Fogelholm, Jesper and Abbey-Lee, Robin and Johnsson, Martin and Dingemanse, Niels J. and Wright, Dominic (2020). Intra-individual behavioural variability: a trait under genetic control. International Journal of Molecular Sciences. 21 , 8069
[Research article]

Hidalgo, André Marubayashi (2015). Exploiting genomic information on purebred and crossbred pigs. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2015:120
ISBN 978-91-576-8438-7
eISBN 978-91-576-8439-4
[Doctoral thesis]

Hill, Jason and Lillie, Mette and Pettersson, Mats E. and Rubin, Carl-Johan and Grant, B. Rosemary and Grant, Peter R. and Andersson, Leif and Jern, Patric (2022). Spatiotemporal variations in retrovirus-host interactions among Darwin's finches. Nature Communications. 13 , 6033
[Research article]

Hollmann, Susanne and Kremer, Andreas and Baebler, Špela and Trefois, Christophe and Gruden, Kristina and Rudnicki, Witold R. and Tong, Weida and Gruca, Aleksandra and Bongcam Rudloff, Erik and Evelo, Chris T. and Nechyporenko, Alina and Frohme, Marcus and Šafránek, David and Regierer, Babette and D'Elia, Domenica (2020). The need for standardisation in life science research - an approach to excellence and trust. F1000Research. 9 , 1398
[Research article]

Holmberg, Mia (2007). Genetic dissection of functional traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2007:92
ISBN 978-91-576-7391-6
[Doctoral thesis]

Höglund, Johanna (2013). Gene mapping of reproduction traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2013:50
ISBN 978-91-576-7839-3
[Doctoral thesis]

Höglund, Johanna and Guldbrandtsen, B. and Lund, Mogens S. and Sahana, G. (2012). Analyzes of genome-wide association follow-up study for calving traits in dairy cattle. BMC genetics. 13 , 1-9
[Research article]

I

Iskandar, Hikmayani and Andersson, Göran and Sonjaya, Herry and Arifiantini, Raden Iis and Said, Syahruddin and Hasbi, Hasbi and Maulana, Tulus and Baharun, Abdullah (2023). Protein Identification of Seminal Plasma in Bali Bull (Bos javanicus). Animals. 13 :3 , 514
[Research article]

Ismael, Ahmed (2016). Genotype by environment interaction for automated and traditional fertility traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:37
ISBN 978-87-93398-22-1
eISBN 978-91-576-8577-3
[Doctoral thesis]

J

Jacobson, Magdalena and Lindberg, Jan Erik and Lundeheim, Nils (2014). Urban and Peri-urban pig farming in developing countries, with a focus on the African continent. SLU-Global report, 2014:4 . Uppsala: SLU Global, Swedish University of Agricultural Sciences
[Report chapter]

Jacobsson, Lina (2005). Genetic Dissection of Growth and Fatness. Diss. (sammanfattning/summary) Swedish University of Agricultural Sciences : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2005:52
ISBN 91-576-6951-1
[Doctoral thesis]

Jansson, Anna and Lindgren, Gabriella and Velie, Brandon D. and Solé Berga, Marina (2021). An investigation into factors influencing basal eye temperature in the domestic horse (Equus caballus) when measured using infrared thermography in field conditions. Physiology and Behavior. 228 , 113218
[Research article]

Jeuthe, Henrik and Palaiokostas, Christos and Johannisson, Anders (2022). DNA fragmentation and membrane integrity in sperm of farmed Arctic charr (Salvelinus alpinus). Aquaculture. 547 , 737537
[Research article]

Jhamat, Naveed and Niazi, Adnan and Guo, Yongzhi and Chanrot, Metasu and Ivanova, Elena and Kelsey, Gavin and Bongcam-Rudloff, Erik and Andersson, Göran and Humblot, Patrice (2020). LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function. BMC Genomics. 21
[Research article]

Jighly, Abdulqader and Benhajali, Haifa and Liu, Zengting and Goddard, Mike and Goddard, Mike E. (2022). MetaGS: an accurate method to impute and combine SNP effects across populations using summary statistics. Genetics Selection Evolution. 54 , 37
[Research article]

Johansson, Anna Maria and Upadhyay, Maulik and Strandberg, Erling and Eriksson, Susanne (2020). Genetic differentiation between subpopulations of Swedish mountain (Fjäll and Fjällnära) cattle. Acta Agriculturae Scandinavica, Section A - Animal Science. 69 , 39-46
[Research article]

Johnsson, Martin and Jungnickel, Melissa K. (2021). Evidence for and localization of proposed causative variants in cattle and pig genomes. Genetics Selection Evolution. 53 , 67
[Article Review/Survey]

Johnsson, Martin and Wall, Helena and Lopes Pinto, Fernando A and Fleming, Robert H. and McCormack, Heather A. and Benavides-Reyes, Cristina and Dominguez-Gasca, Nazaret and Sanchez-Rodriguez, Estefania and Dunn, Ian C. and Rodriguez-Navarro, Alejandro B. (2023). Genetics of tibia bone properties of crossbred commercial laying hens in different housing systems. G3. 13 :2 , , jkac302
[Research article]

Johnsson, Martin and Whalen, Andrew and Ros-Freixedes, Roger and Gorjanc, Gregor and Chen, Ching-Yi and Herring, William O. and De Koning, Dirk-Jan and Hickey, John M. (2021). Genetic variation in recombination rate in the pig. Genetics Selection Evolution. 53 , 54
[Research article]

Juhlin, Jessica (2010). Factors associated with spontaneous oxidized flavour in cow’s milk. Diss. (sammanfattning/summary) SLU : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2010:20
ISBN 978-91-576-7497-5
[Doctoral thesis]

Jäderkvist Fegraeus, Kim (2017). Exploring the horse genome to elucidate the genetics of gaits and athletic performance. Diss. (sammanfattning/summary) Uppsala, Sweden : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:78
ISBN 978-91-7760-046-6
eISBN 978-91-7760-047-3
[Doctoral thesis]

Jönsson, Lina (2013). Orthopaedic health, conformation and longevity in riding horses. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2013:59
ISBN 978-91-576-7856-0
eISBN 978-91-576-7856-7
[Doctoral thesis]

K

Kajungiro, Redempta Athanas (2020). Towards a sustainable tilapia breeding program in Tanzania. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-7760-642-0
eISBN 978-91-7760-643-7
[Doctoral thesis]

Kingsley, N. B. and Hamilton, Natasha A. and Lindgren, Gabriella and Orlando, Ludovic and Bailey, Ernie and Brooks, Samantha and McCue, Molly and Kalbfleisch, T. S. and MacLeod, James N. and Petersen, Jessica L. and Finno, Carrie J. and Bellone, Rebecca R. (2021). "Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare. Frontiers in Genetics. 12 , 649959
[Research article]

Klingström, Tomas (2017). Data integration and handling. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:99
ISBN 978-91-7760-088-6
eISBN 978-91-7760-089-3
[Doctoral thesis]

Klingström, Tomas and Müller, Heimo (2016). Supporting the Development of Biobanks in Low and Medium Income Countries. I/In: IST-Africa Week Conference, 11-13 May, 2016, Durban, South Africa.
[Conference Paper]

Kurta, Khrystyna and Jeuthe, Henrik and De Koning, Dirk-Jan and Palaiokostas, Christos (2022). Evaluating the potential of improving sperm quality traits in farmed Arctic charr (Salvelinus alpinus) using selective breeding. Aquaculture Reports. 25 , 101234
[Research article]

L

Laere, Anne-Sophie van (2005). From QTL to QTN. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2005:9
ISBN 91-576-7008-0
[Doctoral thesis]

Le, Thu Hong (2016). Breeding for robust sows. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:100
ISBN 978-91-576-8702-9
eISBN 978-91-576-8703-6
[Doctoral thesis]

Lee, Mi Ok and Li, Jingyi and Davis, Brian W. and Upadhyay, Srijana and Al Muhisen, Hadil M. and Suva, Larry J. and Clement, Tracy M. and Andersson, Leif (2022). Hmga2 deficiency is associated with allometric growth retardation, infertility, and behavioral abnormalities in mice. G3. 12 :2 , jkab417
[Research article]

Lehrman, Anna and Chatzopoulou, Sevasti Chatzopoulou and Feng, Li and Forabosco, Flavio and Jonas, Elisabeth and Karantininis, Konstantinos and Levander, Fredrik and Nicolia, Alessandro and Rydhmer, Lotta and Röcklinsberg, Helena and Sandin, Per and Sundström, Jens and Zhu, Li-Hua (2014). Shaping our food – an overview of crop and livestock breeding. Uppsala, Sverige: Mistra Biotech, Sveriges lantbruksuniversitet
[Book (author)]

Li, Bingjie (2018). Genetic properties of feed efficiency and related traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:55
ISBN 978-91-7760-250-7
eISBN 978-91-7760-251-4
[Doctoral thesis]

Li, Jingyi and Lee, Mi-Ok and Chen, Junfeng and Davis, Brian W. and Dorshorst, Benjamin J. and Siegel, Paul B. and Inaba, Masafumi and Jiang, Ting-Xin and Chuong, Cheng-Ming and Andersson, Leif (2021). Cis-acting mutation affecting GJA5 transcription is underlying the Melanotic within-feather pigmentation pattern in chickens. Proceedings of the National Academy of Sciences of the United States of America. 118 , e2109363118
[Research article]

Li, Jingyi and Lee, Mi-Ok and Davis, Brian W. and Wu, Ping and Li, Shu-Man Hsieh and Chuong, Cheng-Ming and Andersson, Leif (2021). The crest phenotype in domestic chicken is caused by a 197 bp duplication in the intron of HOXC10. G3. 11 , jkaa048
[Research article]

Li, Jingyi and Lee, MiOk and Davis, Brian W. and Lamichhaney, Sangeet and Dorshorst, Ben J. and Siegel, Paul B. and Andersson, Leif (2020). Mutations Upstream of the TBX5 and PITX1 Transcription Factor Genes Are Associated with Feathered Legs in the Domestic Chicken. Molecular Biology and Evolution. 37 , 2477-2486
[Research article]

Lindgren, Gabriella and Naboulsi, Rakan and Frey, Rebecka and Solé Berga, Marina (2020). Genetics of Skin Disease in Horses. Veterinary Clinics of North America: Equine Practice. 36 , 323-339
[Article Review/Survey]

Liu, Han and Chen, Chunhai and Lv, Maolin and Liu, Ning and Hu, Yafei and Zhang, Hailin and Enbody, Erik D. and Gao, Zexia and Andersson, Leif and Wang, Weimin (2021). A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish. Molecular Biology and Evolution. 38 , 4238-4251
[Research article]

Loberg, Anne (2015). Genetic variance and covariance components for across population evaluation of Brown Swiss cattle. Uppsala : Sveriges lantbruksuniv. , Rapport / SLU, Institutionen för husdjursgenetik, 1401-7520 ; 149
ISBN 978-91-576-9303-7
eISBN 978-91-576-9304-4
[Licentiate thesis]

Low, Matthew and Eksell, Per and Högström, Kjell and Olsson, Ulrika and Audell, Lars and Ohlsson, Åsa (2019). Demography, heritability and genetic correlation of feline hip dysplasia and response to selection in a health screening programme. Scientific Reports. 9 , 1-9
[Research article]

Lundeheim, Nils and Lundgren, Helena and Rydhmer, Lotta (2014). Shoulder ulcers in sows are genetically correlated to leanness of young pigs and to litter weight. Acta agriculturae Scandinavica. Section A, Animal science. 64 , 1-6
[Research article]

Lundgren, Helena (2011). Genetics of sow performance in piglet production. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:91
ISBN 978-91-576-7635-1
[Doctoral thesis]

Lv, Feng-Hua and Cao, Yin-Hong and Liu, Guang-Jian and Luo, Ling-Yun and Lu, Ran and Liu, Ming-Jun and Li, Wen-Rong and Zhou, Ping and Wang, Xin-Hua and Shen, Min and Gao, Lei and Yang, Jing-Quan and Yang, Hua and Yang, Yong-Lin and Liu, Chang-Bin and Wan, Peng-Cheng and Zhang, Yun-Sheng and Pi, Wen-Hui and Ren, Yan-Ling and Shen, Zhi-Qiang and Wang, Feng and Li, Jin-Quan and Salehian-Dehkordi, Hosein and Hehua, Eer and Liu, Yong-Gang and Chen, Jian-Fei and Wang, Jian-Kui and Deng, Xue-Mei and Esmailizadeh, Ali and Dehghani-Qanatqestani, Mostafa and Charati, Hadi and Nosrati, Maryam and Stepanek, Ondrej and Rushdi, Hossam E. and Olsaker, Ingrid and Curik, Ino and Gorkhali, Neena A. and Paiva, Samuel R. and Caetano, Alexandre R. and Ciani, Elena and Amills, Marcel and Weimann, Christina and Erhardt, Georg and Amane, Agraw and Mwacharo, Joram M. and Han, Jian-Lin and Hanotte, Olivier and Periasamy, Kathiravan and Johansson, Anna Maria and Hallsson, Jon H. and Kantanen, Juha and Coltman, David W. and Bruford, Michael W. and Lenstra, Johannes A. and Li, Meng-Hua (2022). Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci. Molecular Biology and Evolution. 39 :2 , msab353
[Research article]

M

Macedo, Fernando and Astruc, J. M. and Meuwissen, T. H. E. and Legarra, A. (2022). Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions. Journal of Dairy Science. 105 :3 , 2439-2452
[Research article]

Mahmoudi, Peyman and Rashidi, Amir and Nazari Ghadikolaei, Anahit and Rostamzadeh, Jalal and Razmkabir, Mohammad and Huson, Heather Jay (2022). Genome-wide association study reveals novel candidate genes for litter size in Markhoz goats. Frontiers in Veterinary Science. 9 , 1045589
[Research article]

Malenje, Evaristo Mukunda and Missohou, Ayao and Fon Tebug, Stanly and Zonabend König, Emelie and Jung'a, Joseph Owino and Bett, Rawlynce Cheruiyot and Marshall, Karen (2022). Economic analysis of smallholder dairy cattle enterprises in Senegal. Tropical Animal Health and Production. 54 , 221
[Research article]

Malm, Sofia (2010). Breeding for improved hip and elbow health in Swedish dogs. Diss. (sammanfattning/summary) SLU : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2010:79
ISBN 978-91-576-7524-8
[Doctoral thesis]

Malmsten, Anna and Lundeheim, Nils and Dalin, Anne-Marie (2020). Dental disorders in sows from Swedish commercial herds. Acta Veterinaria Scandinavica. 62 , 27 , 1-3
[Research article]

Manzoor, Shahid (2014). Computational and comparative investigations of syntrophic acetate-oxidising bacteria (SAOB). Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:56
ISBN 978-91-576-8060-0
eISBN 978-91-576-8061-7
[Doctoral thesis]

Manzoor, Shahid and Bongcam-Rudloff, Erik and Schnürer, Anna and Müller, Bettina (2016). Genome-guided analysis and whole transcriptome profiling of the mesophilic syntrophic acetate oxidising bacterium Syntrophaceticus schinkii. PloS one. 11 :11 , 1-24
[Research article]

Manzoor, Shahid and Niazi, Adnan and Sarosh, Bejai and Meijer, Johan and Bongcam-Rudloff, Erik (2013). Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036. Genome announcements. 1 :2 , e00111-13
[Other publication in scientific journal]

Mao, Xiaowei (2016). Population level genome-wide association studies in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:120
ISBN 978-91-576-8743-2
eISBN 978-91-576-8744-9
[Doctoral thesis]

Mao, Xiaowei and Sahana, Goutam and Johansson, Anna Maria and Liu, Aoxing and Ismael, Ahmed and Lovendahl, Peter and De Koning, Dirk-Jan and Guldbrandtsen, Bernt (2020). Genome-wide association mapping for dominance effects in female fertility using real and simulated data from Danish Holstein cattle. Scientific Reports. 10 , 2953
[Research article]

Maqbool, Khurram (2014). Bioinformatic analysis of whole genome sequencing data. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:58
ISBN 978-91-576-8064-8
eISBN 978-91-576-8065-5
[Doctoral thesis]

Marjanovic, Jovana (2018). Genetics of inherited variability. Diss. (sammanfattning/summary) Wageningen : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:16
ISBN 978-91-7760-172-2
eISBN 978-91-7760-173-9
[Doctoral thesis]

Marjanovic, Jovana and Mulder, Han A. and Rönnegård, Lars and De Koning, Dirk-Jan and Bijma, Piter (2022). Capturing indirect genetic effects on phenotypic variability: Competition meets canalization. Evolutionary applications. 15 :4 , 694-705
[Research article]

Mark, Thomas (2005). International genetic evaluations for udder health traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2005:93
ISBN 91-576-6992-9
[Doctoral thesis]

Martin, Frida and Dube, Faruk and Karlsson Lindsjö, Oskar and Eydal, Matthias and Höglund, Johan and Bergström, Tomas (2020). Transcriptional responses in Parascaris univalens after in vitro exposure to ivermectin, pyrantel citrate and thiabendazole. Parasites and Vectors. 13 , 342 , 1-14
[Research article]

Maximillian, Manzi (2018). Performance of Ankole and crossbred cattle in Rwanda. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:65
ISBN 978-91-7760-270-5
eISBN 978-91-7760-271-2
[Doctoral thesis]

Maximillian, Manzi and Ntawubizi, Martin and D’André Hirwa, Claire and Strandberg, Erling (2022). Milk production performance of Ankole crossbreds and Holstein Friesian cattle in different production environments of Rwanda. Tropical Animal Health and Production. 54 :6 , 358
[Research article]

Maximillian, Manzi and Rydhmer, Lotta and Ntawubizi, Martin and D’Andre Hirwa, Claire and Karege, Callixte and Strandberg, Erling (2020). Milk production and lactation length in Ankole cattle and Ankole crossbreds in Rwanda. Tropical Animal Health and Production. 52 , 2937-2943
[Research article]

Mero, Herieth and Lyantagaye, Sylvester Leonard and Bongcam Rudloff, Erik (2022). Cassava Brown Streak Viruses express second 6-kilodalton (6K2) protein with varied polarity and three dimensional (3D) structures: Basis for trait discrepancy between the virus species. Infection, Genetics and Evolution. 98 , 105219
[Research article]

Mikko, Sofia (2022). Recent advances in genomics of equine health, welfare and performance. I/In: 12th World Congress on Genetics Applied to Livestock Production (WCGALP), 3-8 July, Netherlands.
[Conference Paper]

Mikko, Sofia (1997). A comparative analysis of genetic diversity at Mhc DRB loci in some ruminant species. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Veterinaria, 1401-6257
ISBN 91-576-5237-6
[Doctoral thesis]

Millet, Sam and De Smet, Sarah and Knol, Egbert F. and Bee, Giuseppe and Trevisi, Paolo and Vigors, Stafford and Nilsson, Katja and Van Meensel, Jef (2021). How two concurrent pandemics put a spoke in the wheel of intensive pig production. Animal frontiers. 11 , 14-18
[Research article]

Mondet, Fanny and Parejo, Melanie and Meixner, Marina D. and Costa, Cecilia and Kryger, Per and Andonov, Sreten and Servin, Bertrand and Basso, Benjamin and Bienkowska, Malgorzata and Bigio, Gianluigi and Căuia, Eliza and Cebotari, Valentina and Dahle, Bjørn and Drazic, Marica Maja and Hatjina, Fani and Kovačić, Marin and Kretavicius, Justinas and Lima, Ana S. and Panasiuk, Beata and Pinto, M. Alice and Uzunov, Aleksandar and Wilde, Jerzy and Büchler, Ralph (2020). Evaluation of Suppressed Mite Reproduction (SMR) Reveals Potential for Varroa Resistance in European Honey Bees (Apis melliferaL.). Insects. 11 , 595
[Research article]

Moses, Mbiru and Chauka, Leonard J. and De Koning, Dirk-Jan and Palaiokostas, Christos and Mtolera, Matern S. P. (2021). Growth performance of five different strains of Nile tilapia (Oreochromis niloticus) introduced to Tanzania reared in fresh and brackish waters. Scientific Reports. 11 , 11147
[Research article]

Mushtaq, Mamoona (2015). In silico analysis of Treponema and Brachyspira genomes. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2015:21
ISBN 978-91-576-8240-6
eISBN 978-91-576-8241-3
[Doctoral thesis]

Mäkeläinen, Suvi (2020). Canine inherited retinal degenerations: a model for visual impairment in humans. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-7760-626-0
eISBN 978-91-7760-627-7
[Doctoral thesis]

Mäkeläinen, Suvi and Hellsand, Minas and Van Der Heiden, Anna Darlene and Andersson, Elina and Ström Holst, Bodil and Häggström, Jens and Bersås Ljungvall, Ingrid and Mellersh, Cathryn and Hallböök, Finn and Andersson, Göran and Ekesten, Björn and Bergström, Tomas (2020). Deletion in the Bardet-Biedl syndrome gene TTC8 results in a syndromic retinal degeneration in dogs. Genes. 11 , 1090 , 1-27
[Research article]

N

Naboulsi, Rakan and Cieslak, Jakub and Headon, Denis and Jouni, Ahmad and Negro, Juan J. and Andersson, Göran and Lindgren, Gabriella (2023). The Enrichment of Specific Hair Follicle-Associated Cell Populations in Plucked Hairs Offers an Opportunity to Study Gene Expression Underlying Hair Traits. International Journal of Molecular Sciences. 24 :1 , 561
[Research article]

Naboulsi, Rakan and Larsson, Marten and Andersson, Leif and Younis, Shady (2021). ZBED6 regulates Igf2 expression partially through its regulation of miR483 expression. Scientific Reports. 11 , 19484
[Research article]

Najafi, Mojtaba and Guo, Yongzhi and Andersson, Göran and Humblot, Patrice and Bongcam-Rudloff, Erik (2022). Gene Networks and Pathways Involved in LPS-Induced Proliferative Response of Bovine Endometrial Epithelial Cells. Genes. 13 :12 , 2342
[Research article]

Nguluma, Athumani and Kyallo, Martina and Tarekegn, Getinet Mekuriaw and Loina, Rose and Nziku, Zabron and Chenyambuga, Sebastian and Pelle, Roger (2021). Mitochondrial DNA D-loop sequence analysis reveals high variation and multiple maternal origins of indigenous Tanzanian goat populations. Ecology and Evolution. 11 , 15961-15971
[Research article]

Nguluma, Athumani and Kyallo, Martina and Tarekegn, Getinet Mekuriaw and Loina, Rose and Nziku, Zabron and Chenyambuga, Sebastian and Pelle, Roger (2022). Typology and characteristics of indigenous goats and production systems in different agro-ecological zones of Tanzania. Tropical Animal Health and Production. 54 :1 , 70
[Research article]

Niazi, Adnan (2014). Genome-wide analyses of Bacillus amyloliquefaciens strains provide insights into their beneficial role on plants. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:66
ISBN 978-91-576-8080-8
eISBN 978-91-576-8081-5
[Doctoral thesis]

Nielsen, Christel (2009). Economic impact of mastitis in dairy cows. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2009:29
ISBN 978-91-86195-76-2
[Doctoral thesis]

Nilforooshan, M.A. and Jorjani, Hossein (2022). Invited review: A quarter of a century-International genetic evaluation of dairy sires using MACE methodology. Journal of Dairy Science. 105 , 3-21
[Article Review/Survey]

Nilforooshan, Mohammad Ali (2011). Multiple-trait multiple country genetic evaluation of fertility traits in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:31
ISBN 978-91-576-7566-8
[Doctoral thesis]

Niyonzima, Yvan Bienvenu and Strandberg, Erling and D’Andre Hirwa, Claire and Manzi, Maximilian and Ntawubizi, Martin and Rydhmer, Lotta (2022). The effect of high temperature and humidity on milk yield in Ankole and crossbred cows. Tropical Animal Health and Production. 54 :2 , 85
[Research article]

Norling, Martin (2014). Bioinformatic methods for metagenomics and comparative genetics in veterinary medicine. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:73
ISBN 978-91-576-8094-5
eISBN 978-91-576-8095-2
[Doctoral thesis]

Norling, Martin and Karlsson, Oskar and Gourlé, Hadrien and Bongcam-Rudloff, Erik and Hayer, Juliette (2016). MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies. PloS one. 11 :8 , 1-15
[Research article]

Nyinondi, Christer Simon (2022). Developing the basis of a breeding program for sustainable Rufiji tilapia aquaculture in Tanzania. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-8046-002-6
eISBN 978-91-8046-003-3
[Doctoral thesis]

Nyinondi, Christer Simon and Mtolera, Matern S. P. and Mmochi, Aviti J. and Lopes Pinto, Fernando A and Houston, Ross D. and De Koning, Dirk-Jan and Palaiokostas, Christos (2020). Assessing the genetic diversity of farmed and wild Rufiji tilapia (Oreochromis urolepis urolepis) populations using ddRAD sequencing. Ecology and Evolution. 10 , 10044-10056
[Research article]

Nyman, Sofia (2018). Progesterone profiles, oestrus expression and pregnancy in dairy cows. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:28
ISBN 978-91-7760-196-8
eISBN 978-91-7760-197-5
[Doctoral thesis]

Nyman, Sofia and Johansson, Anna Maria and Palucci, Valentina and Schonherz, Anna A. and Guldbrandtsen, Bernt and Hinrichs, Dirk and De Koning, Dirk-Jan (2022). Inbreeding and pedigree analysis of the European red dairy cattle. Genetics Selection Evolution. 54 :1 , 70
[Research article]

Näsholm, Anna (2009). Avelsindex för de svenska köttraserna. Uppsala: (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet. Rapport / SLU, Institutionen för husdjursgenetik ; 146
[Report]

O

Olk, Tom Robin and Jeuthe, Henrik and Thorarensen, Helgi and Wollebaek, Jens and Lydersen, Espen (2020). Brood-stock management and early hatchery rearing of Arctic charr (Salvelinus alpinus(Linnaeus)). Reviews in Aquaculture. 12 , 1595-1623
[Research article]

Olsson, Elisabeth (2006). Multi-trait evaluation of Swedish warmblood stallions at station performance tests including field and competition records. Uppsala : Sveriges lantbruksuniv. , Rapport / SLU, Institutionen för husdjursgenetik, 1401-7520 ; 144
ISBN 91-576-7178-8
[Licentiate thesis]

Onzima, R. B. and Upadhyay, Maulik and Mukiibi, R. and Kanis, E. and Groenen, M. A. M. and Crooijmans, R. P. M. A. (2018). Genome-wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds. Animal genetics. 49 , 59-70
[Research article]

P

Pabiou, Thierry (2012). Genetics of carcass composition in Irish cattle exploiting carcass video image analysis. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2012:5
ISBN 978-91-576-7689-4
[Doctoral thesis]

Palaiokostas, Christos (2021). Predicting for disease resistance in aquaculture species using machine learning models. Aquaculture Reports. 20 , 100660
[Research article]

Palaiokostas, Christos and Anjum, Anam and Jeuthe, Henrik and Kurta, Khrystyna and Lopes Pinto, Fernando A and De Koning, Dirk-Jan (2022). A genomic-based vision on the genetic diversity and key performance traits in selectively bred Arctic charr (Salvelinus alpinus). Evolutionary applications. 15 :4 , 565-577
[Research article]

Palaiokostas, Christos and Clarke, Shannon M. and Jeuthe, Henrik and Brauning, Rudiger and Bilton, Timothy P. and Dodds, Ken G. and McEwan, John C. and De Koning, Dirk-Jan (2020). Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (Salvelinus alpinus). G3. 10 , 2069-2078
[Research article]

Palaiokostas, Christos and Jeuthe, Henrik and De Koning, Dirk-Jan (2021). Assessing the potential of improving growth and survival to the eyed stage in selectively bred Arctic charr (Salvelinus alpinus). Journal of Animal Breeding and Genetics. 138 , 326-337
[Research article]

Papin (nee Richter), Johanna and Stuhtmann, Gesa and Martinsson, Gunilla and Sieme, Harald and Lundeheim, Nils and Ntallaris, Theodoros and Morrell, Jane (2021). Stored Stallion Sperm Quality Depends on Sperm Preparation Method in INRA82 or INRA96. Journal of Equine Veterinary Science. 98 , 103367
[Research article]

Pappas, Fotis and Palaiokostas, Christos (2021). Genotyping Strategies Using ddRAD Sequencing in Farmed Arctic Charr (Salvelinus alpinus). Animals. 11 , 899
[Research article]

Patxot, Marion and Banos, Daniel Trejo and Kousathanas, Athanasios and Orliac, Etienne J. and Ojavee, Sven E. and Moser, Gerhard and Holloway, Alexander and Sidorenko, Julia and Kutalik, Zoltan and Magi, Reedik and Visscher, Peter M. and Rönnegård, Lars and Robinson, Matthew R. (2021). Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits. Nature Communications. 12 , 6972
[Research article]

Petersson, Karl-Johan (2007). Milk progesterone as a tool to improve fertility in dairy cows. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2007:46
ISBN 978-91-576-7345-9
[Doctoral thesis]

Petersson, Karl-Johan and Strandberg, Erling and Gustafsson, Hans and Berglund, Britt (2006). Environmental effects on progesterone profile measures of dairy cow fertility. Animal reproduction science. 91 :3-4 , 201-214
[Research article]

Petersson, Karl-Johan and Strandberg, Erling and Gustafsson, Hans and Royal, Melissa D. and Berglund, Britt (2008). Detection of delayed cyclicity in dairy cows based on progesterone content in monthly milk samples. Preventive veterinary medicine. 86 :1-2 , 153-163
[Research article]

Popovska Stojanov, Despina and Dimitrov, Lazo and Danihlik, Jiri and Uzunov, Aleksandar and Golubovski, Miroljub and Andonov, Sreten and Brodschneider, Robert (2021). Direct Economic Impact Assessment of Winter Honeybee Colony Losses in Three European Countries. Agriculture. 11 , 398
[Research article]

Powell, Owen and Mrode, Raphael and Gaynor, R. Chris and Johnsson, Martin and Gorjanc, Gregor and Hickey, John M. (2021). Genomic evaluations using data recorded on smallholder dairy farms in low- to middle-income countries. JDS communications. 2 , 366-370
[Research article]

R

Rafati, Nima and Chen, Junfeng and Herpin, Amaury and Pettersson, Mats E. and Han, Fan and Feng, Chungang and Wallerman, Ola and Rubin, Carl-Johan and Peron, Sandrine and Cocco, Arianna and Larsson, Marten and Troetschel, Christian and Poetsch, Ansgar and Korsching, Kai and Bönigk, Wolfgang and Körschen, Heinz G. and Berg, Florian and Folkvord, Arild and Kaupp, U. Benjamin and Schartl, Manfred and Andersson, Leif (2020). Reconstruction of the birth of a male sex chromosome present in Atlantic herring. Proceedings of the National Academy of Sciences of the United States of America. 117 , 24359-24368
[Research article]

Raudsepp, Terje (1999). Comparative genome analysis in the horse. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Veterinaria, 1401-6257
ISBN 91-576-5405-0
[Doctoral thesis]

Rauw, Wendy M. and Rydhmer, Lotta and Kyriazakis, Ilias and overland, Margareth and Gilbert, Helene and Dekkers, Jack C. M. and Hermesch, Susanne and Bouquet, Alban and Izquierdo, Emilio Gomez and Louveau, Isabelle and Gomez-Raya, Luis (2020). Prospects for sustainability of pig production in relation to climate change and novel feed resources. Journal of the Science of Food and Agriculture. 100 , 3575-3586
[Research article]

Ren, Keni and Bernes, Gun and Hetta, Mårten and Karlsson, Johannes (2021). Tracking and analysing social interactions in dairy cattle with real-time locating system and machine learning. Journal of Systems Architecture. 116 , 102139
[Research article]

Ren, Keni and Nielsen, Per Peetz and Alam, Moudud and Rönnegård, Lars (2021). Where do we find missing data in a commercial real-time location system? Evidence from 2 dairy farms. JDS communications. 2 , 28-37
[Research article]

Rezaei, Mehdi and Yngvesson, Jenny and Gunnarsson, Stefan and Jönsson, Lotta and Wallenbeck, Anna (2017). Feed efficiency, growth performance, and carcass characteristics of a fast- and a slower-growing broiler hybrid fed low- or high-protein organic diets. Organic Agriculture. 7 , 1-8
[Research article]

Rius-Vilarrasa, E. and Bünger, L. and Brotherstone, S. and Macfarlane, J.M. and Lambe, N.R. and Matthews, K.R. and Haresign, W. and Roehe, R. (2010). Genetic parameters for carcass dimensional measurements from Video Image Analysis and their association with conformation and fat class scores. Livestock science. 128 :1-3 , 92-100
[Research article]

Rochus, Christina Marie (2017). Genetic diversity of domestic sheep. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:52
ISBN 978-91-576-8877-4
eISBN 978-91-576-8878-1
[Doctoral thesis]

Ros-Freixedes, Roger and Johnsson, Martin and Whalen, Andrew and Chen, Ching-Yi and Valente, Bruno and Herring, William and Gorjanc, Gregor and Hickey, John M. (2022). Genomic prediction with whole-genome sequence data in intensely selected pig lines. Genetics Selection Evolution. 54 , 65
[Research article]

Ros-Freixedes, Roger and Valente, Bruno and Chen, Ching-Yi and Herring, William and Gorjanc, Gregor and Hickey, John M. and Johnsson, Martin (2022). Rare and population-specific functional variation across pig lines. Genetics Selection Evolution. 54 , 39
[Research article]

Rosengren, Maria (2022). Dissecting the genetics of athletic performance and conformation traits in horses. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-7760-893-6
eISBN 978-91-7760-894-3
[Doctoral thesis]

Rosengren, Maria and Sigurðardóttir, Heiðrún and Eriksson, Susanne and Naboulsi, Rakan and Jouni, Ahmad and Novoa, Miguel and Albertsdóttir, Elsa and Kristjánsson, Þorvaldur and Rhodin, Marie and Viklund, Åsa and Velie, Brandon D. and Negro, Juan J. and Solé Berga, Marina and Lindgren, Gabriella (2021). A QTL for conformation of back and croup influences lateral gait quality in Icelandic horses. BMC Genomics. 22 , 267
[Research article]

Roxström, Anki (2001). Genetic aspects of fertility and longevity in dairy cattle. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Agraria, 1401-6249 ; 276
ISBN 91-576-5812-9
[Doctoral thesis]

Rubin, Carl-Johan and Enbody, Erik D. and Dobreva, Mariya P. and Abzhanov, Arhat and Davis, Brian W. and Lamichhaney, Sangeet and Pettersson, Mats and Sendell-Price, Ashley T. and Sprehn, C. Grace and Valle, Carlos A. and Vasco, Karla and Wallerman, Ola and Grant, B. Rosemary and Grant, Peter R. and Andersson, Leif (2022). Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules. Science Advances. 8 :27 , eabm5982
[Research article]

Rydberg, Ingrid and Albihn, Ann and Aronsson, Helena and Berg, Gunilla and Hidén, Christian and Johansson, Tomas and Stark, Magnus and Wirsén, Hulda and Rydhmer, Lotta (2019). Jordbrukets klimatanpassning. Uppsala: (NL, NJ) > Dept. of Soil and Environment
(S) > Dept. of Soil and Environment
(VH) > Dept. of Biomedical Sciences and Veterinary Public Health
(VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet. SLU Future Food Reports ; 9
[Report]

Rydhmer, Lotta (2021). Advances in understanding the genetics of pig behaviour. I/In: Understanding the behaviour and improving the welfare of pigs. Sid./p. 1-23. Burleigh Dodds Science Publishing Limited
ISBN 9781786764430
[Book Chapter]

Rydhmer, Lotta (2014). Inspel till en svensk livsmedelsstrategi. Uppsala: (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet.
[Report]

Rydhmer, Lotta and Jäderkvist Fegraeus, Kim and Hansen-Axelsson, Helen and Rewe, Thomas and Jonas, Elisabeth (2021). Avelsvärdering för svensk lammproduktion. (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet. Rapport / SLU, Institutionen för husdjursgenetik ; 153
[Report]

Röös, Elin and Mie, Axel and Wivstad, Maria and Salomon, Eva and Johansson, Birgitta and Gunnarsson, Stefan and Wallenbeck, Anna and Hoffmann, Ruben and Nilsson, Ulf and Sundberg, Cecilia and Watson, Christine (2018). Risks and opportunities of increasing yields in organic farming. A review. Agronomy for Sustainable Development. 38 , 1-21
[Article Review/Survey]

Röös, Elin and Patel, Mikaela and Spångberg, Johanna and Carlsson, Georg and Rydhmer, Lotta (2015). Kött och mjölk från djur uppfödda på bete och restprodukter - ger det en hållbar kost? Uppsala: (LTJ, LTV) > Department of Biosystems and Technology (from 130101)
(NL, NJ) > Dept. of Energy and Technology
(VH) > Dept. of Animal Nutrition and Management
(VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet.
[Report]

Röös, Elin and Patel, Mikaela and Spångberg, Johanna and Carlsson, Georg and Rydhmer, Lotta (2016). Limiting livestock production to pasture and by-products in a search for sustainable diets. Food Policy. 58 , 1-13
[Research article] (Unpublished)

S

Salavati, Mazdak and Woolley, Shernae A. and Cortés Araya, Yennifer and Halstead, Michelle M. and Stenhouse, Claire and Johnsson, Martin and Ashworth, Cheryl J. and Archibald, Alan L. and Donadeu, Francesc X. and Hassan, Musa A. and Clark, Emily L. (2022). Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions. G3. 12 :2 , jkab424
[Research article]

Salmon Hillbertz, Nicolette (2007). The origin of the ridge and associated anomalies in Rhodesian Ridgebacks. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2007:133
ISBN 978-91-85913-32-9
[Doctoral thesis]

Sandin, Per and Brunius, Carl and Moula, Payam and Röös, Elin and Ekelund Axelson, Lena and Rydhmer, Lotta (2017). Etiska hänsyn vid offentlig upphandling av mat. Uppsala: (LTJ, LTV) > Department of Work Science, Business Economics, and Environmental Psychology (until 2020)
(NL, NJ) > Dept. of Crop Production Ecology
(NL, NJ) > Dept. of Energy and Technology
(NL, NJ) > Department of Molecular Sciences
(VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet.
[Report]

Sani, Morteza Bitaraf and Harofte, Javad Zare and Banabazi, Mohammad Hossein and Faraz, Asim and Esmaeilkhanian, Saeid and Naderi, Ali Shafei and Salim, Nader and Teimoori, Abbas and Bitaraf, Ahmad and Zadehrahmani, Mohammad and Burger, Pamela Anna and Asadzadeh, Nader and Silawi, Mohammad and Sheshdeh, Afsaneh Taghipour and Nazari, Behrouz Mohammad and Faghihi, Mohammad Ali and Roudbari, Zahra (2022). Identification of Candidate Genes for Pigmentation in Camels Using Genotyping-by-Sequencing. Animals. 12 :9 , 1095
[Research article]

Sani, Morteza Bitaraf and Roudbari, Zahra and Karimi, Omid and Banabazi, Mohammad Hossein and Esmaeilkhanian, Saeid and Asadzadeh, Nader and Harofte, Javad Zare and Naderi, Ali Shafei and Burger, Pamela Anna (2022). Gene-Set Enrichment Analysis for Identifying Genes and Biological Activities Associated with Growth Traits in Dromedaries. Animals. 12 :2 , 184
[Research article]

Sayyab, Shumaila (2014). Bioinformatic screening for candidate mutations underlying phenotypic traits in domestic animals. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:92
ISBN 978-91-576-8132-4
eISBN 978-91-576-8133-1
[Doctoral thesis]

Schneider, Maria del Pilar (2006). Fertility, mastitis and longevity in dairy cattle analyzed using survival models. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2006:45
ISBN 91-576-7094-3
[Doctoral thesis]

Schwochow, Doreen and Bornelov, Susanne and Jiang, Tingxing and Li, Jingyi and Gourichon, David and Bed'Hom, Bertrand and Dorshorst, Ben J. and Chuong, Cheng-Ming and Tixier-Boichard, Michele and Andersson, Leif (2021). The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus. Pigment Cell and Melanoma Research. 34 , 1015-1028
[Research article]

Schwochow-Thalmann, Doreen (2018). Molecular identification of colour pattern genes in birds. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:9
ISBN 978-91-7760-158-6
eISBN 978-91-7760-159-3
[Doctoral thesis]

Semenov, Georgy A. and Linck, Ethan and Enbody, Erik D. and Harris, Rebecca B. and Khaydarov, David R. and Alström, Per and Andersson, Leif and Taylor, Scott A. (2021). Asymmetric introgression reveals the genetic architecture of a plumage trait. Nature Communications. 12 , 1019
[Research article]

Senanayake, Kanchana S. and Söderberg, Jonas and Polajev, Aleksei and Malmberg, Maja and Karunanayake, Eric H. and Tennekoon, Kamani H. and Samarakoon, Sameera R. and Bongcam-Rudloff, Erik and Niazi, Adnan (2020). The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites. Genome Biology and Evolution. 12 , 3971-3976
[Research article]

Shrestha, Merina (2017). Genetics of equine insect bite hypersensitivity and genetic diversity in horses. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:1
ISBN 978-91-576-8775-3
eISBN 978-91-576-8776-0
[Doctoral thesis]

Silva, M. and Malmberg, Maja and Otienoburu, S. D. and Bjorkman, A. and Ngasala, B. and Martensson, A. and Gil, J. P. and Veiga, M. I. (2022). Plasmodium falciparum Drug Resistance Genes pfmdr1 and pfcrt In Vivo Co-Expression During Artemether-Lumefantrine Therapy. Frontiers in Pharmacology. 13 , 868723
[Research article]

Simon, Patrick Baenyi and Joseph, Junga Owino and Ochieng, Joel Winyo and Tiambo, Christian Keambou and Tarekegn, Getinet Mekuriaw and Machuka, Eunice M. and Kabange, Dorine and Musale, Katunga and Ciza, Arsene Mushagalusa and Kizungu, Roger Vumilia and Pelle, Roger (2021). Typology, management and smallholder farmer-preferred traits for selection of indigenous goats (Capra hisrcus) in three agro-ecological zones in the Democratic Republic of Congo. Journal of Applied Animal Research. 49 :1 , 423-430
[Research article]

Simon, Patrick Baenyi and Junga, Joseph Owino and Tarekegn, Getinet Mekuriaw and Machuka, Eunice and Tiambo, Christian Keambou and Kabange, Dorine and Musale, Katunga and Kizungu, Roger Vumilia and Ochieng, Joel Winyo and Pelle, Roger (2022). Haplotype analysis of the mitochondrial DNA d-loop region reveals the maternal origin and historical dynamics among the indigenous goat populations in east and west of the Democratic Republic of Congo. Ecology and Evolution. 12 :3 , e8713
[Research article]

Singh, Abhijeet and Nylander, Johan A. A. and Schnürer, Anna and Bongcam-Rudloff, Erik and Müller, Bettina (2020). High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure. Frontiers in Microbiology. 11 , 2066
[Research article]

Solé Berga, Marina and Lindgren, Gabriella and Bongcam-Rudloff, Erik and Jansson, Anna (2020). Benefits and risks of barefoot harness racing in Standardbred trotters. Animal Science Journal. 91 , e13380
[Research article]

Stein, Jennie (2011). Trypanotolerance and phenotypic characteristics of four Ethiopian cattle breeds. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:29
ISBN 978-91-576-7564-4
[Doctoral thesis]

Steinbock, Lena (2006). Comparative aspects on genetics of stillbirth and calving difficulty in Swedish dairy cattle breeds. Uppsala : Sveriges lantbruksuniv.
ISBN 91-576-7151-6
[Licentiate thesis]

Stenberg, Hedvig and Hellman, Stina and Lindström, Lisa and Jacobson, Magdalena and Fossum, Caroline and Hayer, Juliette and Malmberg, Maja (2022). Congenital tremor and splay leg in piglets - insights into the virome, local cytokine response, and histology. BMC Veterinary Research. 18 :1 , 348
[Research article]

Stenberg, Hedvig and Jacobson, Magdalena and Malmberg, Maja (2020). Detection of atypical porcine pestivirus in Swedish piglets with congenital tremor type A-II. BMC Veterinary Research. 16 , 260
[Research article]

Stenberg, Hedvig and Jacobson, Magdalena and Malmberg, Maja (2020). A review of congenital tremor type A-II in piglets. Animal Health Research Reviews. 21 , PII S146625232000002X , 84-88
[Article Review/Survey]

Stenberg, Hedvig and Leveringhaus, Elena and Malmsten, Anna and Dalin, Anne-Marie and Postel, Alexander and Malmberg, Maja (2022). Atypical porcine pestivirus-A widespread virus in the Swedish wild boar population. Transboundary and Emerging Diseases. 69 :4 , 2349-2360
[Research article]

Sterning, Marie (1996). Reproductive performance and oestrous symptoms in primiparous sows. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Veterinaria, 1401-6257
ISBN 91-576-5229-5
[Doctoral thesis]

Stingo-Hirmas, Diego and Cunha, Felipe and Cardoso, Rita France and Carra, Laura G. and Rönnegård, Lars and Wright, Dominic and Henriksen, Rie (2022). Proportional Cerebellum Size Predicts Fear Habituation in Chickens. Frontiers in Physiology. 13 , 826178
[Research article]

Strandberg, Erling and Friedrich, Juliane and Talenti, Andrea and Arvelius, Per and Haskell, Marie J. and Wiener, Pamela (2020). Unravelling selection signatures in a single dog breed suggests recent selection for morphological and behavioral traits. Advanced Genetics. 2 , e10024
[Research article]

Sundberg, Katarina (2012). Unraveling the genetics of lymphocytic thyroiditis using the dog as a model. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2012:31
ISBN 978-91-576-7667-2
[Doctoral thesis]

Sundström, Elisabeth (2010). Molecular genetics and mechanisms of pigmentation and melanoma. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2010:76
ISBN 978-91-576-7521-7
[Doctoral thesis]

Söderlund, Robert (2015). Molecular epidemiology of verotoxigenic Escherichia coli O157:H7. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2015:110
ISBN 978-91-576-8418-9
eISBN 978-91-576-8419-6
[Doctoral thesis]

Söderlund, Robert and Hedenström, Ingela and Nilsson, Anna and Eriksson, Erik and Aspán, Anna (2012). Genetically similar strains of Escherichia coli O157:H7 isolated from sheep, cattle and human patients. BMC Veterinary Research. 8 :200 , 1-4
[Research article]

T

Taherkhani, Lida and Banabazi, Mohammad Hossein and EmamJomeh-Kashan, Nasser and Noshary, Alireza and Imumorin, Ikhide (2022). The Candidate Chromosomal Regions Responsible for Milk Yield of Cow: A GWAS Meta-Analysis. Animals. 12 :5 , 582
[Research article]

Tarekegn, Getinet Mekuriaw and Karlsson, Johanna and Kronqvist, Cecilia and Berglund, Britt and Holtenius, Kjell and Strandberg, Erling (2021). Genetic parameters of forage dry matter intake and milk produced from forage in Swedish Red and Holstein dairy cows. Journal of Dairy Science. 104 , 4424-4440
[Research article]

Tarekegn, Getinet Mekuriaw and Khayatzadeh, Negar and Liu, Bin and Osama, Sarah and Haile, Aynalem and Rischkowsky, Barbara and Zhang, Wenguang and Tesfaye, Kassahun and Dessie, Tadelle and Mwai, Okeyo A. and Djikeng, Appolinaire and Mwacharo, Joram M. (2021). Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub-Saharan African goats. Evolutionary applications. 14 , 1716-1731
[Research article]

Tarekegn, Getinet Mekuriaw and Strandberg, Erling and Andonov, Sreten and Båge, Renee and Gullstrand, Patricia and Rius-Vilarrasa, E. and Christensen, J.M. and Berglund, Britt (2021). Single-step genome-wide association study uncovers known and novel candidate genomic regions for endocrine and classical fertility traits in Swedish Red and Holstein dairy cows. Livestock Science. 253 , 104731
[Research article]

Tenghe, Amabel M. M. (2017). Milk progesterone measures to improve genomic selection for fertility in dairy cows. Diss. (sammanfattning/summary) Sweden : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:37
ISBN 978-91-576-8847-7
eISBN 978-91-576-8848-4
[Doctoral thesis]

Thorarinsdottir, T. and Eriksson, Susanne and Albertsdóttir, Elsa (2021). Genetic Parameters and Genetic Trends of Female Fertility in Icelandic Dairy Cattle. Livestock Science. 251 , 104628
[Research article]

Thorén Hellsten, Emma (2008). International sport horse data for genetic evaluation. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2008:32
ISBN 978-91-85913-65-7
[Doctoral thesis]

Thorén Hellsten, Emma and Viklund, Åsa (2016). Nya avelsindex ger hjälp vid hingstvalet. Ridsport. 2016 :1 , 48-51
[Magazine article]

Tibbo, Markos (2006). Productivity and health of indigenous sheep breeds and crossbreds in the Central Ethiopian Highlands. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2006:51
ISBN 91-576-7100-1
[Doctoral thesis]

Tonheim, Susanne and Slotte, Aril and Andersson, Leif and Folkvord, Arild and Berg, Florian (2020). Comparison of Otolith Microstructure of Herring Larvae and Sibling Adults Reared Under Identical Early Life Conditions. Frontiers in marine science. 7 , 529 , 1-13
[Research article]

Torsson, Emeli and Kgotlele, Tebogo and Misinzo, Gerald and Johansson Wensman, Jonas and Berg, Mikael and Karlsson Lindsjö, Oskar (2020). Field-Adapted Full Genome Sequencing of Peste-Des-Petits-Ruminants Virus Using Nanopore Sequencing. Frontiers in Veterinary Science. 7 , 542724
[Research article]

Truvé, Katarina (2012). Bioinformatics mining for disease causing mutations. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2012:64
ISBN 978-91-576-7711-2
[Doctoral thesis]

Törnsten, Anna (2000). Physical mapping of important trait loci in the pig. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae. Veterinaria, 1401-6257 ; 96
ISBN 91-576-5913-3
[Doctoral thesis]

U

Upadhyay, Maulik (2019). Genomic variation across European cattle: contribution of gene flow. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2019:16
ISBN 978-91-7760-350-4
eISBN 978-91-7760-351-1
[Doctoral thesis]

V

Van Damme, Renaud and Hoelzer, Martin and Viehweger, Adrian and Müller, Bettina and Bongcam-Rudloff, Erik and Brandt, Christian (2021). Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN). PLoS Computational Biology. 17 , e1008716
[Research article]

Viklund, Åsa (2010). Genetic evaluation of swedish warmblood horses. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2010:48
ISBN 978-91-576-7461-6
[Doctoral thesis]

Viklund, Åsa and Braam, Å. and Näsholm, Anna and Strandberg, Erling and Philipsson, Jan (2010). Genetic variation in competition traits at different ages and time periods and correlations with traits at field tests of 4-year-old Swedish Warmblood horses. Animal. 4 :5 , 682-691
[Research article]

Viklund, Åsa and Näsholm, Anna and Strandberg, Erling and Philipsson, Jan (2010). Effects of long-time series of data on genetic evaluations for performance of Swedish Warmblood riding horses. Animal. 4 :11 , 1823-1831
[Research article]

Viklund, Åsa and Thorén Hellsten, Emma and Näsholm, Anna and Strandberg, Erling and Philipsson, Jan (2008). Genetic parameters for traits evaluated at field tests of 3- and 4-year-old Swedish Warmblood horses. Animal. 2 :12 , 1832-1841
[Research article]

Viluma, Agnese (2017). Applying massive parallel sequencing technologies to unravel the genomic complexity in domestic species. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:93
ISBN 978-91-7760-076-3
eISBN 978-91-7760-077-0
[Doctoral thesis]

W

Waldmann, Patrik and Pfeiffer, Christina and Meszaros, Gabor (2020). Sparse Convolutional Neural Networks for Genome-Wide Prediction. Frontiers in Genetics. 11 , 1-9
[Research article]

Wall, Helena and Boyner, Malin and De Koning, Dirk-Jan and Kindmark, A. and McCormack, H. A. and Fleming, R. H. and Lopes Pinto, Fernando A and Tauson, Anne-Helene (2022). Integument, mortality, and skeletal strength in extended production cycles for laying hens - effects of genotype and dietary zinc source. British Poultry Science. 63 :2 , 115-124
[Research article]

Wallenbeck, Anna (2009). Pigs for organic production. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2009:37
ISBN 978-91-86195-84-7
[Doctoral thesis]

Wallenbeck, Anna and Eliasson, Christina and Lundeheim, Nils and Nilsson, Katja (2020). Leg health, growth and carcass characteristics in growing-finishing pigs of two different genotypes reared on Swedish organic farms. Organic Agriculture. 10 , 97-103
[Research article]

Wallgren, Torun and Lundeheim, Nils and Gunnarsson, Stefan (2020). Impact of amount of straw on pig and pen hygiene in partly slatted flooring systems. BMC Veterinary Research. 16 , 377
[Research article]

Wambua, Sammy and Gourlé, Hadrien and de Villiers, Etienne P. and Karlsson-Lindsjö, Oskar E. and Wambiji, Nina and Macdonald, Angus and Bongcam-Rudloff, Erik and de Villiers, Santie (2021). Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean. Frontiers in Microbiology. 12 , 673128
[Research article]

Wang, Chao and Wallerman, Ola and Arendt, Maja-Louise and Sundstrom, Elisabeth and Karlsson, Asa and Nordin, Jessika and Mäkeläinen, Suvi and Pielberg, Gerli Rosengren and Hanson, Jeanette and Ohlsson Andersson, Åsa and Saellström, Sara and Rönnberg, Henrik and Bersås Ljungvall, Ingrid and Häggström, Jens and Bergström, Tomas F. and Hedhammar, Åke and Meadows, Jennifer R. S. and Lindblad-Toh, Kerstin (2021). A novel canine reference genome resolves genomic architecture and uncovers transcript complexity. Communications biology. 4 , 185
[Research article]

Wang, Dandan and Pan, Dengke and Xie, Baocai and Wang, Shengnan and Xing, Xiangyang and Liu, Xuexue and Ma, Yuehui and Andersson, Leif and Wu, Jiangwei and Jiang, Lin (2021). Porcine ZBED6 regulates growth of skeletal muscle and internal organs via multiple targets. PLOS GENETICS. 17 , e1009862
[Research article]

Wang, Shizhi (2018). International breeding programs to improve health in pedigree dogs. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2018:36
ISBN 978-91-7760-212-5
eISBN 978-91-7760-213-2
[Doctoral thesis]

Wang, Shizhi and Friedrich, Juliane and Strandberg, Erling and Arvelius, Per and Wiener, Pamela (2020). Methods to Improve Joint Genetic Evaluation of Canine Hip Dysplasia Across BVA/KC and FCI Screening Schemes. Frontiers in Veterinary Science. 7 , 386
[Research article]

Wang, Shizhi and Strandberg, Erling and Arvelius, Per and Clements, Dylan N. and Wiener, Pamela and Friedrich, Juliane (2021). Genome-wide association studies for canine hip dysplasia in single and multiple populations - implications and potential novel risk loci. BMC Genomics. 22 , 636
[Research article]

Wang, Xuan and Younis, Shady and Cen, Jing and Wang, Yun and Krizhanovskii, Camilla and Andersson, Leif and Welsh, Nils (2021). ZBED6 counteracts high-fat diet-induced glucose intolerance by maintaining beta cell area and reducing excess mitochondrial activation. Diabetologia. 64 , 2292-2305
[Research article]

Welderufael, Berihu (2017). Genetic evaluation of susceptibility to- and recoverability from mastitis in dairy cows. Diss. (sammanfattning/summary) Uppsala, Sweden : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2017:71
ISBN 978-91-7760-032-9
eISBN 978-91-7760-033-6
[Doctoral thesis]

Welling, Virpi and Lundeheim, Nils and Bengtsson, Björn (2020). A Pilot Study in Sweden on Efficacy of Benzylpenicillin, Oxytetracycline, and Florfenicol in Treatment of Acute Undifferentiated Respiratory Disease in Calves. Antibiotics. 9 , 736
[Research article]

Wilbe, Maria (2013). Discovery of a novel pathway for an SLE-related disease complex in the canine breed Nova Scotia duck tolling retriever. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2013:16
ISBN 978-91-576-7773-0
[Doctoral thesis]

Wilbe, Maria and Kozyrev, Sergey V. and Farias, F.H.G. and Bremer, Hanna and Hedlund, Anna and Pielberg, Gerli and Seppälä, Eija H. and Gustafson, Ulla and Lohi, Hannes and Carlborg, Örjan and Andersson, Göran and Hamlin, Helene and Lindblad-Toh, Kerstin (2015). Multiple Changes of Gene Expression and Function Reveal Genomic and Phenotypic Complexity in SLE-like Disease. PLoS genetics. 11 , 1-27
[Research article]

Wille, Michelle and Johansson Wensman, Jonas and Larsson, Simon and Van Damme, Renaud and Theelke, Anna-Karin and Hayer, Juliette and Malmberg, Maja (2020). Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs. Infection, Genetics and Evolution. 82 , 104290 , 1-9
[Research article]

Willforss, J. and Morrell, Jane and Resjö, Svante and Hallap, T. and Padrik, P. and Siino, V and De Koning, Dirk-Jan and Andreasson, Erik and Levander, F. and Humblot, Patrice (2021). Stable bull fertility protein markers in seminal plasma. Journal of Proteomics. 236 , 104135
[Research article]

Wivstad, Maria and Wallenbeck, Anna and Høøk Presto, Magdalena and Göransson, Leif and Alarik, Maria (2012). Foder till grisar i ekologisk produktion. Uppsala: (VH) > Dept. of Animal Breeding and Genetics, Sveriges lantbruksuniversitet.
[Report]

Wolfsberger, Walter W. and Ayala, Nikole M. and Castro-Marquez, Stephanie O. and Irizarry-Negron, Valerie M. and Potapchuk, Antoliy and Shchubelka, Khrystyna and Potish, Ludvig and Majeske, Audrey J. and Oliver, Luis Figueroa and Lameiro, Alondra Diaz and Martinez-Cruzado, Juan Carlos and Lindgren, Gabriella and Oleksyk, Taras K. (2022). Genetic diversity and selection in Puerto Rican horses. Scientific Reports. 12 , 515
[Research article]

Y

Younis, Shady and Naboulsi, Rakan and Wang, Xuan and Cao, Xiaofang and Larsson, Marten and Sargsyan, Ernest and Bergsten, Peter and Welsh, Nils and Andersson, Leif (2020). The importance of the ZBED6-IGF2 axis for metabolic regulation in mouse myoblast cells. FASEB Journal. 34 , 10250-10266
[Research article]

Z

Zira, Stanley (2022). Towards sustainable livestock systems: Developing and applying methods for broad sustainability assessment of pig and cattle systems. Diss. (sammanfattning/summary) Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880
ISBN 978-91-7760-959-9
eISBN 978-91-7760-960-5
[Doctoral thesis]

Zira, Stanley and Ivarsson, Emma and Friman, Johanna and Møller, H. and Samsonstuen, S. and Olsen, H.F. and Rydhmer, Lotta (2022). An assessment of scenarios for future pig production using a One Health approach. Livestock Science. 260 , 104929
[Research article]

Zira, Stanley and Röös, Elin and Ivarsson, Emma and Hoffmann, Ruben and Rydhmer, Lotta (2020). Social life cycle assessment of Swedish organic and conventional pork production. International Journal of Life Cycle Assessment. 25 , 1957-1975
[Research article]

Zonabend König, Emelie (2016). Breeding programme and infrastructure. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:21
ISBN 978-91-576-8544-5
eISBN 978-91-576-8545-2
[Doctoral thesis]

Zonabend König, Emelie and Ojango, Julie and Strandberg, Erling and Mwai, O. and Philipsson, Jan (2016). Sustainable breeding strategies for the Red Maasai sheep.
[Conference abstract] (In Press)

Zubair, Saima (2015). Bioinformatics analysis of bacterial pathogens from East African camels. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2015:22
ISBN 978-91-576-8242-0
eISBN 978-91-576-8243-7
[Doctoral thesis]

Ö

Öborn, Ingrid and Rydhmer, Lotta and Vrede, Katarina and Bengtsson, Jan and Magnusson, Ulf (2012). What challenges is agriculture facing? Rome.

Öhlund, Malin and Franzen, Petra and Andersson, Göran and Ström Holst, Bodil and Lau, Joey (2014). Laser microdissection of pancreatic islets allows for quantitative real-time pcr detection of islet-specific gene expression in healthy and diabetic cats. Journal of gastroenterology, pancreatology & liver disorders. 1 :4 , 1-9
[Research article]

Öhlund, Pontus and Delhomme, Nicolas and Hayer, Juliette and Hesson, Jenny C. and Blomström, Anne-Lie (2022). Transcriptome Analysis of an Aedes albopictus Cell Line Single- and Dual-Infected with Lammi Virus and WNV. International Journal of Molecular Sciences. 23 :2 , 875
[Research article]

Öhlund, Pontus and Hayer, Juliette and Hesson, Jenny C. and Blomström, Anne-Lie (2021). Small RNA Response to Infection of the Insect-Specific Lammi Virus and Hanko Virus in an Aedes albopictus Cell Line. Viruses. 13 :11 , 2181
[Research article]