Open access publications in the SLU publication database

A

Abarenkov, Kessy and Kristiansson, Erik and Ryberg, Martin and Nogal-Prata, Sandra and Kristiansson, Erik and Gomez-Martinez, Daniela and Stueer-Patowsky, Katrin and Jansson, Tobias and Polme, Sergei and Corcoll, Natalia and Scharn, Ruud and Sanchez-Garcia, Marisol and Wurzbacher, Christian and Khomich, Maryia and Nilsson, R. Henrik (2022). The curse of the uncultured fungus. MycoKeys :86 , 177-194
[Research article]

Alström, Per (2015). Ordning i klassen! Taxonomi & systematik – exempel från fåglarnas värld. Fauna och flora. 110 :1 , 2-16
[Magazine article]

Alström, Per and Barnes, Keith N. and Barker, F. Keith and Olsson, Urban and Bloomer, Paulette and Khan, Aleem Ahmed and Qureshi, Masood Ahmed and Guillaumet, Alban and Crochet, Pierre-André and Ryan, Peter G. (2013). Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular phylogenetics and evolution. 69 :3 , 1043-1056
[Research article]

Alström, Per and Jönsson,, Knud A and Ödeen, Anders and Fjeldså, Jon and Ericson, Per G.P. and Irestedt, Martin (2015). Dramatic niche shifts and morphological change in two insular bird species. Royal Society open science. 2 , 1-9
[Research article]

Alström, Per and Olsson, Urban (2016). Integrative taxonomy of the Plain‑backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species. Avian research. 7 , 1-39
[Research article]

Alström, Per and Olsson, Urban and Lei, Fumin (2013). A review of the recent advances in the systematics of the avian superfamily Sylvioidea. Chinese Birds. 4 :2 , 99-131
[Research article]

Alström, Per and Rasmussen, Pamela C. and Xia, Canwei and Olsson, Urban and Dai, Bo and Zhao, Jian and Leader, Paul J. and Carey, Geoff J. and Dong, Lu and Cai, Tianlong and Holt, Paul I and Le Manh, Hung and Song, Gang and Liu, Yang and Zhang, Yanyun and Lei, Fumin (2015). Integrative taxonomy of the Russet Bush Warbler Locustella mandelli complex reveals a new species from central China. Avian research. 6 , 1-33
[Research article]

Aoki, Wataru and Bergius, Niclas and Kozlan, Serhii and Fukuzawa, Fuminori and Okuda, Hitomi and Murata, Hitoshi and Ishida, Takahide A. and Vaario, Lu-Min and Kobayashi, Hisayasu and Kalmis, Erbil and Fukiharu, Toshimitsu and Gisusi, Seiki and Matsushima, Ken-ichi and Terashima, Yoshie and Narimatsu, Maki and Matsushita, Norihisa and Ka, Kang-Hyeon and Yu, Fuqiang and Yamanaka, Takashi and Fukuda, Masaki and Yamada, Akiyoshi (2022). New findings on the fungal species Tricholoma matsutake from Ukraine, and revision of its taxonomy and biogeography based on multilocus phylogenetic analyses. Mycoscience. 63 :5 , 197-214
[Research article]

B

Brandrud, T. E. and Gorbunova, I. A. and Ageev, D. V. and Dahlberg, Anders and Dima, B. and Morozova, O. V. and Svetasheva, T. YU. (2019). New Data on Cortinarius funga (Agaricales, Basidiomycota) from Altaiskiy nature reserve and Gorno-Altaysk area (SW Siberia, Russia). Mikologiâ i fitopatologiâ. 53 , 325-341
[Research article]

C

Casini, Michele and Orio, Alessandro (2019). Skrubbskäddan stjäl östersjötorskens middag. Havsutsikt. 2019 :1 , 22-23
[Magazine article]

Chernyshev, Alexei V. and Alfaya, Jose E. Fernandez and Anadon, Nuria and Andrade, Sonia C. S. and Bartolomaeus, Thomas and von Dohren, Jorn and Fernandez-Alvarez, Fernando Angel and Giribet, Gonzalo and Junoy, Juan and Kajihara, Hiroshi and Kem, William R. and Kuris, Armand and Kvist, Sebastian and Machordom, Annie and Mcevoy, Eric G. and Norenburg, Jon L. and Okazaki, Robert K. and Rogers, Alex D. and Strand, Malin and Sun, Shi-chun and Sundberg, Per and Thiel, Martin (2023). Raymond Gibson (1938-2023): in memoriam. Zootaxa. 5311 :4 , 596-599
[Other publication in scientific journal]

Chiappa, Giulia and Perini, Matteo and Cafiso, Alessandra and Nodari, Riccardo and Wilhelmsson, Peter and Lindgren, Per-Eric and Omazic, Anna and Ullman, Karin and Moutailler, Sara and Kjellander, Petter and Bazzocchi, Chiara and Grandi, Giulio (2022). A Novel High Discriminatory Protocol for the Detection of Borrelia afzelii, Borrelia burgdorferi Sensu Stricto and Borrelia garinii in Ticks. Pathogens. 11 :11 , 1234
[Research article]

D

De Jong, Johnny and Ebenhard, Torbjörn and Ahlén, Ingemar and Gerell, Rune and Gerell Lundberg, Karin (2015). Nya svenska namn på Europas fladdermöss. Fauna och flora. 110 :1 , 36-42
[Magazine article]

Durkin, Louisa and Jansson, Tobias and Sanchez-Garcia, Marisol and Khomich, Maryia and Ryberg, Martin and Kristiansson, Erik and Nilsson, R. Henrik (2020). When mycologists describe new species, not all relevant information is provided (clearly enough). MycoKeys. 72 , 109-128
[Research article]

F

Fregin, Silke and Haase, Martin and Olsson, Urban and Alström, Per (2012). New insights into family relationships within the avian superfamily Sylvioidea (Passeriformes) based on seven molecular markers. BMC evolutionary biology. 12 , 1-12
[Research article]

Frugone, Maria Jose and Cole, Theresa L. and López, Maria-Eugenia and Clucas, Gemma and Matos-Maravi, Pavel and Lois, Nicolas A. and Pistorius, Pierre and Bonadonna, Francesco and Trathan, Phil and Polanowski, Andrea and Wienecke, Barbara and Raya-Rey, Andrea and Putz, Klemens and Steinfurth, Antje and Bi, Ke and Wang-Claypool, Cynthia Y. and Waters, Jonathan M. and Bowie, Rauri C. K. and Poulin, Elie and Vianna, Juliana A. (2021). Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation. Diversity and Distributions. 27 , 2277-2296
[Research article]

G

Gebrezgiher, Genet Berhe and Makundi, Rhodes H. and Meheretu, Yonas and Mulungu, Loth S. and Katakweba, Abdul A. S. (2022). A Decade-Long Change in the Elevational Distribution of Non-Volant Small Mammals on Mount Meru, Tanzania. Diversity. 14 :6 , 454
[Research article]

Grace, Molly K. and Akcakaya, H. Resit and Bennett, Elizabeth L. and Brooks, Thomas M. and Heath, Anna and Hedges, Simon and Hilton-Taylor, Craig and Hoffmann, Michael and Hochkirch, Axel and Jenkins, Richard and Keith, David A. and Long, Barney and Mallon, David P. and Meijaard, Erik and Milner-Gulland, E. J. and Paul Rodriguez, Jon and Stephenson, P. J. and Stuart, Simon N. and Young, Richard P. and Acebes, Pablo and Alfaro-Shigueto, Joanna and Alvarez-Clare, Silvia and Arbetman, Marina and Azat, Claudio and Bacchetta, Gianluigi and Badola, Ruchi and Barcelos, Luis M. D. and Barreiros, Joao Pedro and Basak, Sayanti and Berger, Danielle J. and Bhattacharyya, Sabuj and Bino, Gilad and Borges, Paulo A. and Boughton, Raoul K. and Brockmann, H. Jane and Buckley, Hannah L. and Burfield, Ian J. and Burton, James and Camacho-Badani, Teresa and Santiago Cano-Alonso, Luis and Carmichael, Ruth H. and Carrero, Christina and P Carroll, John and Catsadorakis, Giorgos and Chapple, David G. and Chapron, Guillaume and Chowdhury, Gawsia Wahidunnessa and Claassens, Louw and Cogoni, Donatella and Constantine, Rochelle and Craig, Christie Anne and Cunningham, Andrew A. and Dahal, Nishma and Daltry, Jennifer C. and Das, Goura Chandra and Dasgupta, Niladri and Davey, Alexandra and Davies, Katharine and Develey, Pedro and Elangovan, Vanitha and Fairclough, David and Di Febbraro, Mirko and Fenu, Giuseppe and Fernandes, Fernando Moreira and Fernandez, Eduardo Pinheiro and Finucci, Brittany and Foldesi, Rita and Foley, Catherine M. and Ford, Matthew and Forstner, Michael R. J. and Garcia-Sandoval, Ricardo and Gardner, Penny C. and Garibay-Orijel, Roberto and Gatan-Balbas, Marites and Gauto, Irene and Ghazi, Mirza Ghazanfar Ullah and Godfrey, Stephanie S. and Gollock, Matthew and Gonzalez, Benito A. and Grant, Tandora D. and Gray, Thomas and Gregory, Andrew J. and van Grunsven, Roy H. A. and Gryzenhout, Marieka and Guernsey, Noelle C. and Gupta, Garima and Hagen, Christina and Hagen, Christian A. and Hall, Madison B. and Hallerman, Eric and Hare, Kelly and Hart, Tom and Hartdegen, Ruston and Harvey-Brown, Yvette and Hatfield, Richard and Hawke, Tahneal and Hermes, Claudia and Hitchmough, Rod and Hoffmann, Pablo Melo and Howarth, Charlie and Hudson, Michael A. and Hussain, Syed Ainul and Huveneers, Charlie and Jacques, Helene and Jorgensen, Dennis and Katdare, Suyash and Katsis, Lydia K. D. and Kaul, Rahul and Kaunda-Arara, Boaz and Keith-Diagne, Lucy and Kraus, Daniel T. and de Lima, Thales Moreira and Lindeman, Ken and Linsky, Jean and Louis, Edward and Loy, Anna and Lughadha, Eimear Nic and Mangel, Jeffrey C. and Marinari, Paul E. and Martin, Gabriel M. and Martinelli, Gustavo and McGowan, Philip J. K. and McInnes, Alistair and Mendes, Eduardo Teles Barbosa and Millard, Michael J. and Mirande, Claire and Money, Daniel and Monks, Joanne M. and Laura Morales, Carolina and Mumu, Nazia Naoreen and Negrao, Raquel and Niloy, Md Nazmul Hasan and Nguyen, Anh Ha and Norbury, Grant Leslie and Nordmeyer, Cale and O'Brien, Mark and Oda, Gabriela Akemi and Orsenigo, Simone and Pasachnik, Stesha and Perez-Jimenez, Juan Carlos and Pike, Charlotte and Pilkington, Fred and Plumb, Glenn and Portela, Rita de Cassia Quitete and Prohaska, Ana and Quintana, Manuel G. and Rakotondrasoa, Eddie Fanantenana and Rankou, Hassan and Rawat, Ajay Prakash and Reardon, James Thomas and Rheingantz, Marcelo Lopes and Richter, Stephen C. and Rivers, Malin C. and da Rosa, Patricia and Rose, Paul and Royer, Emily and Ryan, Catherine and de Mitcheson, Yvonne J. Sadovy and Salmon, Lily and Salvador, Carlos Henrique and Samways, Michael J. and Sanjuan, Tatiana and Dos Santos, Amanda Souza and Sasaki, Hiroshi and Schutz, Emmanuel and Scott, Heather Ann and Scott, Robert Michael and Serena, Fabrizio and Sharma, Surya P. and Shuey, John A. and Silva, Carlos Julio Polo and Simaika, John P. and Smith, David R. and Spaet, Julia L. Y. and Sultana, Shanjida and Talukdar, Bibhab Kumar and Tatayah, Vikash and Thomas, Philip and Tringali, Angela and Tuboi, Chongpi and Hoang, Trinh-Dinh and Usmani, Aftab Alam and Vasco-Palacios, Aida M. and Vie, Jean-Christophe and Virens, Jo and Walker, Alan and Wallace, Bryan and Waller, Lauren J. and Wang, Hongfeng and Wearn, Oliver R. and van Weerd, Merlijn and Weigmann, Simon and Willcox, Daniel and Woinarski, John and Yong, Jean W.H. and Young, Stuart (2021). Testing a global standard for quantifying species recovery and assessing conservation impact. Conservation Biology. 35 , 1833-1849
[Research article]

I

Iwarsson, Mattias (2014). Gamla trädgårdsväxter. Visby: (NL, NJ) > Swedish Biodiversity Centre, Sveriges lantbruksuniversitet.
[Factsheet] (Unpublished)

J

Jensen, Anna Monrad (2011). Effects of facilitation and competition on oak seedlings. Diss. (sammanfattning/summary) Alnarp : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:58
ISBN 978-91-576-7602-3
[Doctoral thesis]

Jonsell, Mats (2013). Fyra dåligt kända skalbaggar i vedsvamp: våra rödlistade tickgnagare (sl. Dorcatoma, Ptinidae). Entomologisk tidskrift. 134 :4 , 173-180
[Research article]

K

Kahlert, Maria and Karjalainen, Satu Maaria and Keck, Francois and Kelly, Martyn and Ramon, Mathieu and Rimet, Frederic and Schneider, Susanne and Tapolczai, Kalman and Zimmermann, Jonas (2022). Co-occurrence, ecological profiles and geographical distribution based on unique molecular identifiers of the common freshwater diatoms Fragilaria and Ulnaria. Ecological Indicators. 141 , 109114
[Research article]

Kotila, Miika and Helle, Samuli and Lehto, Harry J. and Rojas, Danny and Vesterinen, Eero J. and Vesterinen, Eero and Lilley, Thomas M. (2022). Atmospheric humidity affects global variation of bat echolocation via indirect effects. Frontiers in Ecology and Evolution. 10 , 934876
[Research article]

L

Loaisiga, C.H. (2011). Cytogenetics, genetic diversity and phylogenetics of wild Zea species, with emphasis on Zea nicaraguensis. Diss. (sammanfattning/summary) Sweden : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2011:41
ISBN 978-91-576-7585-9
[Doctoral thesis]

M

Montoliu-Nerin, Merce and Sanchez-Garcia, Marisol and Bergin, Claudia and Kutschera, Verena Esther and Johannesson, Hanna and Bever, James D. and Rosling, Anna (2021). In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies. Frontiers in fungal biology. 2 , 716385
[Research article]

Muzila, Mbaki (2016). Genetic, morphological and chemical variation in the genus Harpagophytum. Diss. (sammanfattning/summary) Alnarp : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2016:67
ISBN 978-91-576-8636-7
eISBN 978-91-576-8637-4
[Doctoral thesis]

N

Nascimbene, Juri and Gheza, Gabriele and Hafellner, Josef and Mayrhofer, Helmut and Muggia, Lucia and Obermayer, Walter and Thor, Göran and Nimis, Pier Luigi (2021). Refining the picture: new records to the lichen biota of Italy. MycoKeys , 97-137
[Research article]

Nilsson, R. Henrik and Ryberg, Martin and Wurzbacher, Christian and Tedersoo, Leho and Anslan, Sten and Polme, Sergei and Spirin, Viacheslav and Mikryukov, Vladimir and Svantesson, Sten and Hartmann, Martin and Lennartsdotter, Charlotte and Belford, Pauline and Khomich, Maryia and Retter, Alice and Corcoll, Natalia and Martinez, Daniela Gomez and Jansson, Tobias and Vu, Duong and Sanchez-Garcia, Marisol and Kristiansson, Erik and Abarenkov, Kessy (2023). How, not if, is the question mycologists should be asking about DNA-based typification. MycoKeys :96 , 143-157
[Research article]

O

Olsson, Urban and Alström, Per (2013). Molecular evidence suggests that the enigmatic Sulawesi endemic Geomalia heinrichi belongs in the genus Zoothera (Turdidae, Aves). Chinese Birds. 4 :2 , 155-160
[Research article]

Ozerov, Mikhail and Flajshans, Martin and Noreikiene, Kristina and Vasemägi, Anti and Gross, Riho (2020). Draft genome assembly of the freshwater apex predator wels catfish (Silurus glanis) using linked-read sequencing. G3. 10 , 3897-3906
[Research article]

P

Pesiu, Elizabeth and Lee, Gaik Ee and Salam, Muhammad Razali and Salim, Jamilah Mohd and Lau, Kah Hoo and Yong, Jean W.H and Abdullah, Mohd Tajuddin (2022). Species composition, diversity and biomass estimation in coastal and marine protected areas of Terengganu, Peninsular Malaysia. Agronomy. 12 :10 , 2380
[Research article]

R

Rimet, Frédéric and Vasselon, Valentin and Gusev, Evgenuy and Kahlert, Maria and Kelly, Martyn G. and Kulikovskiy, Maxim and Maltsev, Yevhen and Mann, David G. and Pfannkuchen, Martin and Trobajo, Rosa and Zimmermann, Jonas and Bouchez, Agnes (2019). Diat.barcode, an open-access curated barcode library for diatoms. Scientific Reports. 9 , 1-12
[Research article]

Ronquist, Fredrik and Forshage, Mattias and Haggqvist, Sibylle and Karlsson, Dave and Hovmolle, Rasmus and Bergsten, Johannes and Holston, Kevin and Britton, Tom and Abenius, Johan and Andersson, Bengt and Buhl, Peter Neerup and Coulianos, Carl-Cedric and Fjellberg, Arne and Gertsson, Carl-Axel and Hellqvist, Sven and Jaschhof, Mathias and Kjaerandsen, Jostein and Klopfstein, Seraina and Kobro, Sverre and Liston, Andrew and Meier, Rudolf and Pollet, Marc and Riedel, Matthias and Rohacek, Jindrich and Schuppenhauer, Meike and Stigenberg, Julia and Struwe, Ingemar and Taeger, Andreas and Ulefors, Sven-Olof and Varga, Oleksandr and Withers, Phil and Gärdenfors, Ulf (2020). Completing Linnaeus's inventory of the Swedish insect fauna: Only 5,000 species left? PLoS ONE. 15 , e0228561 , 1-30
[Research article]

Roslin, Tomas and Somervuo, Panu and Pentinsaari, Mikko and Hebert, Paul D. N. and Agda, Jireh and Ahlroth, Petri and Anttonen, Perttu and Aspi, Jouni and Blagoev, Gergin and Blanco, Santiago and Chan, Dean and Clayhills, Tom and deWaard, Jeremy and deWaard, Stephanie and Elliot, Tyler and Elo, Riikka and Haapala, Sami and Helve, Eero and Ilmonen, Jari and Hirvonen, Petri and Ho, Chris and Itämies, Juhani and Ivanov, Vladislav and Jakovlev, Jevgeni and Juslen, Aino and Jussila, Reijo and Kahanpaa, Jere and Kaila, Lauri and Kaitila, Jari-Pekka and Kakko, Ari and Kakko, Iiro and Karhu, Ali and Karjalainen, Sami and Kjaerandsen, Jostein and Koskinen, Janne and Laasonen, Erkki M. and Laasonen, Leena and Laine, Erkka and Lampila, Petri and Levesque-Beaudin, Valerie and Lu, Liuqiong and Lahteenaro, Meri and Majuri, Pekka and Malmberg, Sampsa and Manjunath, Ramya and Martikainen, Petri and Mattila, Jaakko and McKeown, Jaclyn and Metsälä, Petri and Miklasevskaja, Margarita and Miller, Meredith and Miskie, Renee and Naik, Suresh and Nikolova, Nadia and Nupponen, Kari and Ovaskainen, Otso and Österblad, Ika and Paasivirta, Lauri and Pajunen, Timo and Parkko, Petri and Paukkunen, Juho and Penttinen, Ritva and Perez, Kate and Pohjoismaki, Jaakko and Prosser, Sean and Raekunnas, Martti and Rahulan, Miduna and Rannisto, Meeri and Ratnasingham, Sujeevan and Raukko, Pekka and Rinne, Aki and Rintala, Teemu and Miranda Romo, Susana and Salmela, Jukka and Salokannel, Juha and Savolainen, Riitta and Schulman, Leif and Sihvonen, Pasi and Soliman, Dina and Sones, Jayme and Steinke, Claudia and Stahls, Gunilla and Tabell, Jukka and Tiusanen, Mikko and Varkonyi, Gergely and Vesterinen, Eero and Viitanen, Esko and Vikberg, Veli and Viitasaari, Matti and Vilen, Jussi and Warne, Connor and Wei, Catherine and Winqvist, Kaj and Zakharov, Evgeny and Mutanen, Marko (2022). A molecular-based identification resource for the arthropods of Finland. Molecular Ecology Resources. 22 , 803-822
[Research article]

S

Sahraei, Shadi Eshghi and Furneaux, Brendan and Kluting, Kerri and Zakieh, Mustafa and Rydin, Hakan and Hytteborn, Hakan and Rosling, Anna (2022). Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long-read metabarcoding. Ecology and Evolution. 12 :3 , e8676
[Research article]

Scalone, Romain and Albach, Dirk C. (2014). Cytological evidence for gametophytic self-incompatibility in the genus Veronica. Turkish journal of botany. 38 :1 , 197-201
[Research article]

Soltan‑Alinejad, Parisa and Rafinejad, Javad and Dabiri, Farrokh and Onorati, Piero and Terenius, Olle and Chavshin, Ali Reza (2021). Molecular analysis of the mitochondrial markers COI, 12S rDNA and 16S rDNA for six species of Iranian scorpions. BMC Research Notes. 14 :1 , 40
[Research article]

Svensson, Måns and Westberg, Martin and Thor, Göran (2017). Taxonomic novelties and new records of Fennoscandian crustose lichens. MycoKeys. 25 , 51-86
[Research article]

U

Ulfstedt, Mikael (2014). Functional studies of plant hexokinases and development of genetic methods in the moss Physcomitrella patens. Diss. (sammanfattning/summary) Uppsala : Sveriges lantbruksuniv., Acta Universitatis Agriculturae Sueciae, 1652-6880 ; 2014:29
ISBN 978-91-576-8006-8
eISBN 978-91-576-8007-5
[Doctoral thesis]

V

Van Poucke, Kris and Haegeman, Annelies and Goedefroit, Thomas and Focquet, Fran and Leus, Leen and Jung, Marilia Horta and Nave, Corina and Redondo, Miguel Angel and Husson, Claude and Kostov, Kaloyan and Lyubenova, Aneta and Christova, Petya and Chandelier, Anne and Slavov, Slavcho and de Cock, Arthur and Bonants, Peter and Werres, Sabine and Oliva Palau, Jonàs and Marçais, Benoit and Jung, Thomas and Stenlid, Jan and Ruttink, Tom and Heungens, Kurt (2021). Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation. IMA fungus. 12 , 16
[Research article]

W

Wijayawardene, Nalin N. and Bahram, Mohammad and Sanchez-Castro, Ivan and Dai, Dong-Qin and Ariyawansa, Kahandawa G. S. U. and Jayalal, Udeni and Suwannarach, Nakarin and Tedersoo, Leho (2021). Current Insight into Culture-Dependent and Culture-Independent Methods in Discovering Ascomycetous Taxa. Journal of Fungi. 7 , 703
[Article Review/Survey]

Z

Zhurbenko, M.P. and Etayo, Javier and Fedrowitz, Katja and Thor, Göran (2015). Miscellaneous reports of lichenicolous fungi from Argentina including the new species Didymellopsis nephromatis. Opuscula Philochenum. 14 , 82-89
[Research article]